Evidence map›Paper›PMID 22815530›Full record

ArticleCancer research2012

Truncated DNMT3B isoform DNMT3B7 suppresses growth, induces differentiation, and alters DNA methylation in human neuroblastoma.

Kelly R Ostler, Qiwei Yang, Timothy J Looney, Li Zhang, Aparna Vasanthakumar, Yufeng Tian, Masha Kocherginsky, Stacey L Raimondi, Jessica G DeMaio, Helen R Salwen and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. DNA Methyltransferases: From Evolution to Clinical Applications.International journal of molecular sciences · 2022
    Review
  5. Genetic Studies on Mammalian DNA Methyltransferases.Advances in experimental medicine and biology · 2022
    Article
  6. Review
  7. Neuroblastoma and the epigenome.Cancer metastasis reviews · 2021
    Review
  8. Article
  9. Epigenetics insights · 2020
    Article
  10. Review
  11. Review
  12. Review
  13. Targeting of epigenetic regulators in neuroblastoma.Experimental & molecular medicine · 2018
    Review
  14. Article
  15. Article
  16. The Mechanism and Function of Epigenetics in Uterine Leiomyoma Development.Reproductive sciences (Thousand Oaks, Calif.) · 2016
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Kelly R OstlerDepartment of Medicine, The University of Chicago, Chicago, Illinois 60637, USA.
Qiwei Yang
Timothy J Looney
Li Zhang
Aparna Vasanthakumar
Yufeng Tian
Masha Kocherginsky
Stacey L Raimondi
Jessica G DeMaio
Helen R Salwen
Song Gu
Alexandre Chlenski
Arlene Naranjo
Amy Gill
Radhika Peddinti
Bruce T Lahn
Susan L Cohn
Lucy A Godley
University of Chicago · USElmhurst College · USShanghai Children's Medical Center · CNChildren's Oncology Group · USUniversity of Florida · USUniversity of Illinois Chicago · USHoward Hughes Medical Institute · US

Funding

COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
Children's Oncology Group Statistics &Data Center GrantU10CA098413 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI DEVIDAS, MEENAKSHI · 2003 to 2013
$67.5M
UF Clinical and Translational Science AwardUL1TR000064 · NCATS · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2012 to 2014
$12.2M
The Role of DNMT3B in the DNA Methylation of Cancer CellsR01CA129831 · NCI · UNIVERSITY OF CHICAGO · PI GODLEY, LUCY ANN · 2008 to 2012
$1.8M
Identifying the molecular basis for hormonal influence on hematopoiesisF32DK092030 · NIDDK · UNIVERSITY OF CHICAGO · PI VASANTHAKUMAR, APARNA · 2011 to 2013
$166k
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR000064NCI NIH HHS CA129831NCI NIH HHS R01 CA129831NCI NIH HHS U10 CA098413NCI NIH HHS U10 CA098543NCI NIH HHS U10 CA98413NCI NIH HHS U10 CA98543NIDDK NIH HHS F32 DK092030
6 · The paper itself

Abstract

Epigenetic changes in pediatric neuroblastoma may contribute to the aggressive pathophysiology of this disease, but little is known about the basis for such changes. In this study, we examined a role for the DNA methyltransferase DNMT3B, in particular, the truncated isoform DNMT3B7, which is generated frequently in cancer. To investigate if aberrant DNMT3B transcripts alter DNA methylation, gene expression, and phenotypic character in neuroblastoma, we measured DNMT3B expression in primary tumors. Higher levels of DNMT3B7 were detected in differentiated ganglioneuroblastomas compared to undifferentiated neuroblastomas, suggesting that expression of DNMT3B7 may induce a less aggressive clinical phenotype. To test this hypothesis, we investigated the effects of enforced DNMT3B7 expression in neuroblastoma cells, finding a significant inhibition of cell proliferation in vitro and angiogenesis and tumor growth in vivo. DNMT3B7-positive cells had higher levels of total genomic methylation and a dramatic decrease in expression of the FOS and JUN family members that comprise AP1 transcription factors. Consistent with an established antagonistic relationship between AP1 expression and retinoic acid receptor activity, increased differentiation was seen in the DNMT3B7-expressing neuroblastoma cells following treatment with all-trans retinoic acid (ATRA) compared to controls. Our results indicate that DNMT3B7 modifies the epigenome in neuroblastoma cells to induce changes in gene expression, inhibit tumor growth, and increase sensitivity to ATRA.

Indexed as

Cell ProliferationAnimalsAntineoplastic AgentsCell DifferentiationCell Line, TumorDNA (Cytosine-5-)-MethyltransferasesDNA MethylationDNA Methyltransferase 3BDrug Resistance, NeoplasmEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticHumansIsoenzymesMiceMice, NudeAntineoplastic AgentsDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BIsoenzymesTretinoin

Identifiers

PMID22815530
PMCPMC3445765
OpenAlexW2117990418

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.