Evidence map›Paper›PMID 22815240›Full record

ArticleJournal of biophotonics2013

Development and comparative assessment of Raman spectroscopic classification algorithms for lesion discrimination in stereotactic breast biopsies with microcalcifications.

Narahara Chari Dingari, Ishan Barman, Anushree Saha, Sasha McGee, Luis H Galindo, Wendy Liu, Donna Plecha, Nina Klein, Ramachandra Rao Dasari, Maryann Fitzmaurice

Abstract readComparative Study
In one paragraph

Article in Journal of biophotonics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Narahara Chari DingariMassachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, USA. ndingari@mit.edu
Ishan Barman
Anushree Saha
Sasha McGee
Luis H Galindo
Wendy Liu
Donna Plecha
Nina Klein
Ramachandra Rao Dasari
Maryann Fitzmaurice
Massachusetts Institute of Technology · USCase Western Reserve University · USUniversity Hospitals Case Medical Center · USIIT@MIT · USUniversity of North Carolina at Chapel Hill · US

Funding

WIDE-FIELD REFLECTION PHASE MICROSCOPYP41RR002594 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI PARK, YOUNGKYU · 1985 to 2011
$12.3M
Wide-Field Short-Wave Infrared (SWIR) multiphoton (MP) tissue imagingP41EB015871 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SO, PETER T. · 2012 to 2021
$11.3M
Raman Spectroscopy for Guidance of Stereotactic Breast Biopsies for MicrocalcificR01CA140288 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI FITZMAURICE, MARYANN · 2009 to 2011
$1.0M
Acquisition of a Leica SCN400 Slide Scanning System For Use In A Multi-User FacilS10RR031845 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI CONRAD, PATRICIA A · 2011 to 2011
$377k
NCI NIH HHS R01 CA140288NCI NIH HHS R01-CA140288NCRR NIH HHS 1S10RR031845NCRR NIH HHS P41 RR002594NCRR NIH HHS P41-RR02594NCRR NIH HHS S10 RR031845NIBIB NIH HHS P41 EB015871
6 · The paper itself

Abstract

Microcalcifications are an early mammographic sign of breast cancer and a target for stereotactic breast needle biopsy. Here, we develop and compare different approaches for developing Raman classification algorithms to diagnose invasive and in situ breast cancer, fibrocystic change and fibroadenoma that can be associated with microcalcifications. In this study, Raman spectra were acquired from tissue cores obtained from fresh breast biopsies and analyzed using a constituent-based breast model. Diagnostic algorithms based on the breast model fit coefficients were devised using logistic regression, C4.5 decision tree classification, k-nearest neighbor (k -NN) and support vector machine (SVM) analysis, and subjected to leave-one-out cross validation. The best performing algorithm was based on SVM analysis (with radial basis function), which yielded a positive predictive value of 100% and negative predictive value of 96% for cancer diagnosis. Importantly, these results demonstrate that Raman spectroscopy provides adequate diagnostic information for lesion discrimination even in the presence of microcalcifications, which to the best of our knowledge has not been previously reported.

Indexed as

AlgorithmsStereotaxic TechniquesAdultAgedBiopsy, Large-Core NeedleBreastBreast NeoplasmsCalcinosisFemaleFormaldehydeHumansMiddle AgedParaffin EmbeddingSpectrum Analysis, RamanFormaldehyde

Identifiers

PMID22815240
PMCPMC4094342
OpenAlexW2151998428

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.