Evidence map›Paper›PMID 22813744›Full record

ArticleCell reports2012

The C-terminal domain of eukaryotic initiation factor 5 promotes start codon recognition by its dynamic interplay with eIF1 and eIF2β.

Rafael E Luna, Haribabu Arthanari, Hiroyuki Hiraishi, Jagpreet Nanda, Pilar Martin-Marcos, Michelle A Markus, Barak Akabayov, Alexander G Milbradt, Lunet E Luna, Hee-Chan Seo and 12 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 73 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 2 countries.

Rafael E LunaDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Haribabu Arthanari
Hiroyuki Hiraishi
Jagpreet Nanda
Pilar Martin-Marcos
Michelle A Markus
Barak Akabayov
Alexander G Milbradt
Lunet E Luna
Hee-Chan Seo
Sven G Hyberts
Amr Fahmy
Mikhail Reibarkh
David Miles
Patrick R Hagner
Elizabeth M O'Day
Tingfang Yi
Assen Marintchev
Alan G Hinnebusch
Jon R Lorsch
Katsura Asano
Gerhard Wagner
Harvard University · USKansas State University · USJohns Hopkins University · USBoston University · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USNational Institutes of Health · USUniversity of Bergen · NO

Funding

Translational & Transcriptional Control Of Gene Expression By Nutrients In YeastZIAHD001004 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI HINNEBUSCH, ALAN G · 2009 to 2025
$34.4M
T CELL SPECIFIC TRANSCRIPTION COMPLEXESP01GM047467 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1992 to 2017
$28.6M
TRAINING PROGRAM IN MOLECULAR HEMATOLOGYT32HL007623 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI HANDIN, ROBERT I · 1985 to 2010
$7.0M
STRUCTURAL BASIS OF TRANSLATION INITIATION BY EIF-4ER01CA068262 · NCI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1996 to 2015
$3.6M
Studies on start codon selection by eukaryotic ribosomesR01GM064781 · NIGMS · KANSAS STATE UNIVERSITY · PI ASANO, KATSURA · 2002 to 2010
$2.4M
Mechanisms of assembly and remodeling of human translation initiation complexesR01GM095720 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MARINTCHEV, ASSEN G · 2011 to 2015
$1.5M
Novel targets to regulate NF-kB & SREBP activity: an approach to combat diabetesK01DK085198 · NIDDK · HARVARD MEDICAL SCHOOL · PI ARTHANARI, HARIBABU · 2010 to 2012
$455k
CRYOPROBE FOR A 600 MHZ NMR SPECTROMETERS10RR015742 · NCRR · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 2001 to 2001
$226k
Roles of Human elF1 in Translation Preinitiation Complex AssemblyF32GM079970 · NIGMS · HARVARD MEDICAL SCHOOL · PI LUNA, RAFAEL E · 2007 to 2008
$101k
Intramural NIH HHS ZIA HD001004NCI NIH HHS CA68262NCI NIH HHS R01 CA068262NCRR NIH HHS S10 RR015742NHLBI NIH HHS T32 HL007623NHLBI NIH HHS T32HL07623-25NIDDK NIH HHS K01 DK085198NIDDK NIH HHS K01-DK085198NIGMS NIH HHS F32 GM079970NIGMS NIH HHS GM47467NIGMS NIH HHS GM64781NIGMS NIH HHS GM79970NIGMS NIH HHS P01 GM047467NIGMS NIH HHS R01 GM064781NIGMS NIH HHS R01 GM095720
6 · The paper itself

Abstract

Recognition of the proper start codon on mRNAs is essential for protein synthesis, which requires scanning and involves eukaryotic initiation factors (eIFs) eIF1, eIF1A, eIF2, and eIF5. The carboxyl terminal domain (CTD) of eIF5 stimulates 43S preinitiation complex (PIC) assembly; however, its precise role in scanning and start codon selection has remained unknown. Using nuclear magnetic resonance (NMR) spectroscopy, we identified the binding sites of eIF1 and eIF2β on eIF5-CTD and found that they partially overlapped. Mutating select eIF5 residues in the common interface specifically disrupts interaction with both factors. Genetic and biochemical evidence indicates that these eIF5-CTD mutations impair start codon recognition and impede eIF1 release from the PIC by abrogating eIF5-CTD binding to eIF2β. This study provides mechanistic insight into the role of eIF5-CTD's dynamic interplay with eIF1 and eIF2β in switching PICs from an open to a closed state at start codons.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionBinding SitesCodon, InitiatorConserved SequenceEpitopesEukaryotic Initiation Factor-1Eukaryotic Initiation Factor-2Eukaryotic Initiation Factor-5Evolution, MolecularGene DeletionGenetic Complementation TestHumansKineticsLysineMagnetic Resonance SpectroscopyCodon, InitiatorEpitopesEukaryotic Initiation Factor-1Eukaryotic Initiation Factor-2Eukaryotic Initiation Factor-5LysineMutant Proteins

Identifiers

PMID22813744
PMCPMC3401385
OpenAlexW2154920902

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.