Evidence map›Paper›PMID 22813741›Full record

ArticleCell reports2012

Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.

Seemay Chou, Nhat Khai Bui, Alistair B Russell, Katrina W Lexa, Taylor E Gardiner, Michele LeRoux, Waldemar Vollmer, Joseph D Mougous

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
  2. Article
  3. Two cysteines control Tse1 secretion by H1-T6SS in Pseudomonas aeruginosa.Protein science : a publication of the Protein Society · 2025
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  14. Review
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  17. Killing of Gram-negative and Gram-positive bacteria by a bifunctional cell wall-targeting T6SS effector.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Seemay ChouDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Nhat Khai Bui
Alistair B Russell
Katrina W Lexa
Taylor E Gardiner
Michele LeRoux
Waldemar Vollmer
Joseph D Mougous
University of Washington · USNewcastle University · GBUniversity of California, San Francisco · US

Funding

Type VI secretion effectors and interbacterial competition in vivoR01AI080609 · NIAID · YALE UNIVERSITY · PI MOUGOUS, JOSEPH DAVID · 2009 to 2025
$6.7M
Characterizing Natural Product Permeability and BioactivityF32GM100619 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEXA, KATRINA WALDEN · 2012 to 2014
$150k
NIAID NIH HHS AI080609NIAID NIH HHS R01 AI080609NIGMS NIH HHS F32 GM100619PHS HHS DGE-0718124
6 · The paper itself

Abstract

The target range of a bacterial secretion system can be defined by effector substrate specificity or by the efficacy of effector delivery. Here, we report the crystal structure of Tse1, a type VI secretion (T6S) bacteriolytic amidase effector from Pseudomonas aeruginosa. Consistent with its role as a toxin, Tse1 has a more accessible active site than related housekeeping enzymes. The activity of Tse1 against isolated peptidoglycan shows its capacity to act broadly against Gram-negative bacteria and even certain Gram-positive species. Studies with intact cells indicate that Gram-positive bacteria can remain vulnerable to Tse1 despite cell wall modifications. However, interbacterial competition studies demonstrate that Tse1-dependent lysis is restricted to Gram-negative targets. We propose that the previously observed specificity for T6S against Gram-negative bacteria is a consequence of high local effector concentration achieved by T6S-dependent targeting to its site of action rather than inherent effector substrate specificity.

Indexed as

Bacterial Secretion SystemsAmidohydrolasesAmino Acid SequenceBacillus subtilisBacterial ProteinsCatalytic DomainConserved SequenceCrystallography, X-RayDisaccharidesMass SpectrometryModels, MolecularMolecular Sequence DataPeptidoglycanProtein BindingProtein Structure, SecondaryPseudomonas aeruginosaamidaseAmidohydrolasesBacterial ProteinsBacterial Secretion SystemsDisaccharidesPeptidoglycan

Identifiers

PMID22813741
PMCPMC3401384
OpenAlexW2028125551

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.