Evidence map›Paper›PMID 22811387›Full record

ArticleProtein science : a publication of the Protein Society2012

Domain organization of XAF1 and the identification and characterization of XIAP(RING) -binding domain of XAF1.

Man Kit Tse, Chi Kong Cho, Wai Fung Wong, Bing Zou, Sin Kam Hui, Benjamin Chun Yu Wong, Kong Hung Sze

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Identification of a GermlineHuman mutation · 2026
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  8. Aberrant splicing and drug resistance in AML.Journal of hematology & oncology · 2016
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  10. p53 mediated apoptosis in osteosarcoma MG-63 cells by inhibition of FANCD2 gene expression.International journal of clinical and experimental medicine · 2015
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Man Kit TseDepartment of Microbiology and State Key Laboratory for Emerging Infectious Diseases, University of Hong Kong, Hong Kong SAR, People's Republic of China.
Chi Kong Cho
Wai Fung Wong
Bing Zou
Sin Kam Hui
Benjamin Chun Yu Wong
Kong Hung Sze
University of Hong Kong · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-linked inhibitor of apoptosis protein (XIAP)-associated factor 1 (XAF1) has been implicated as a novel tumor suppressor, which was proposed to exert pro-apoptotic effect by antagonizing the anticaspase activity of XIAP. Here, we delineated the domain architecture of XAF1 by applying limited proteolysis and peptide mass fingerprinting analysis. Our results indicated that XAF1 has a distinct domain organization, with a highly compact N-terminal domain (XAF1(NTD) ) followed by a middle domain (XAF1(MD) ), a 42-residue unstructured linker and a C-terminal domain (XAF1(CTD) ). The search of XIAP binding region within XAF1 revealed that a modest affinity XIAP(RING) binding site (dissociation constant, K(d) , ∼18 μM) is located at the C-terminal portion of XAF1. This C-terminal region, embracing XAF1(CTD) and a flexible tail at C-terminus (residue Thr251-Ser301), is functionally identified as XIAP(RING) -binding domain of XAF1 (XAF1(RBD) ) in the present study. We have also mapped the interaction sites for XAF1(RBD) on XIAP(RING) by using NMR spectroscopy. By applying in vitro ubiquitination assay, we observed that XAF1(RBD) /XIAP interaction is essential for the ubiquitination of GST-XAF1(RBD) fusion protein. In addition, the C-terminal XAF1 fragment harboring XAF1(RBD) was found to be substantially ubiquitinated by XIAP(RING) . Base on these observations, we speculate a possible role of XAF1(RBD) in targeting XAF1 for XIAP-mediated ubiquitination.

Indexed as

Adaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsBinding SitesHumansIntracellular Signaling Peptides and ProteinsModels, MolecularNeoplasm ProteinsNuclear Magnetic Resonance, BiomolecularPeptide FragmentsPeptide MappingProtein Interaction MappingProtein Structure, TertiarySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationUbiquitinationX-Linked Inhibitor of Apoptosis ProteinAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsIntracellular Signaling Peptides and ProteinsNeoplasm ProteinsPeptide FragmentsXAF1 protein, humanXIAP protein, humanX-Linked Inhibitor of Apoptosis Protein

Identifiers

PMID22811387
PMCPMC3526985
OpenAlexW2121095710

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.