Evidence map›Paper›PMID 22809252›Full record

ArticleBiochemistry2012

1,2,3-Triazole-heme interactions in cytochrome P450: functionally competent triazole-water-heme complexes.

Kip P Conner, Preethi Vennam, Caleb M Woods, Matthew D Krzyaniak, Michael K Bowman, William M Atkins

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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  3. Review
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  15. Efficient biosynthesis of heterodimeric CNature communications · 2018
    Article
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kip P ConnerDepartment of Medicinal Chemistry, Box 357610, University of Washington, Seattle, WA 98195-7610, USA.
Preethi Vennam
Caleb M Woods
Matthew D Krzyaniak
Michael K Bowman
William M Atkins
University of Alabama · USUniversity of Washington · US

Funding

TOXIC DRUG INTERACTIONS WITH VALPROIC ACIDP01GM032165 · NIGMS · UNIVERSITY OF WASHINGTON · PI RETTIE, ALLAN EDWARD · 1985 to 2012
$18.3M
Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
P450-Base Drug Interactions with Low Spin DrugsR01GM110790 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 2013 to 2016
$1.7M
NIGMS NIH HHS P01 GM032165NIGMS NIH HHS R01 GM110790NIGMS NIH HHS T32 GM007750PHS HHS P0132165PHS HHS TG07752
6 · The paper itself

Abstract

In comparison to imidazole (IMZ) and 1,2,4-triazole (1,2,4-TRZ), the isosteric 1,2,3-triazole (1,2,3-TRZ) is unrepresented among cytochrome P450 (CYP) inhibitors. This is surprising because 1,2,3-TRZs are easily obtained via "click" chemistry. To understand this underrepresentation of 1,2,3-TRZs among CYP inhibitors, thermodynamic and density functional theory computational studies were performed with unsubstituted IMZ, 1,2,4-TRZ, and 1,2,3-TRZ. The results indicate that the lower affinity of 1,2,3-TRZ for the heme iron includes a large unfavorable entropy term likely originating in solvent-1,2,3-TRZ interactions; the difference is not solely due to differences in the enthalpy of heme-ligand interactions. In addition, the 1,2,3-TRZ fragment was incorporated into a well-established CYP3A4 substrate and mechanism-based inactivator, 17-α-ethynylestradiol (17EE), via click chemistry. This derivative, 17-click, yielded optical spectra consistent with low-spin ferric heme iron (type II) in contrast to 17EE, which yields a high-spin complex (type I). Furthermore, the rate of CYP3A4-mediated metabolism of 17-click was comparable to that of 17EE, with a different regioselectivity. Surprisingly, continuous-wave electron paramagnetic resonance (EPR) and HYSCORE EPR spectroscopy indicate that 17-click does not displace water from the sixth axial ligand position of CYP3A4 as expected for a type II ligand. We propose a binding model in which 17-click pendant 1,2,3-TRZ hydrogen bonds with the sixth axial water ligand. The results demonstrate the potential for 1,2,3-TRZ to form metabolically labile water-bridged low-spin heme complexes, consistent with recent evidence that nitrogenous type II ligands of CYPs can be efficiently metabolized. The specific case of [CYP3A4·17-click] highlights the risk of interpreting CYP-ligand complex structure on the basis of optical spectra.

Indexed as

Click ChemistryCytochrome P-450 CYP3ACytochrome P-450 CYP3A InhibitorsCytochrome P-450 Enzyme InhibitorsCytochrome P-450 Enzyme SystemElectron Spin Resonance SpectroscopyEthinyl EstradiolHemeImidazolesIsomerismKineticsMagnetic Resonance SpectroscopyProtein BindingQuantum TheoryThermodynamicsTriazolesCytochrome P-450 CYP3ACytochrome P-450 CYP3A InhibitorsCytochrome P-450 Enzyme InhibitorsCytochrome P-450 Enzyme SystemEthinyl EstradiolHemeimidazoleImidazolesTriazolesWater

Identifiers

PMID22809252
PMCPMC3448000
OpenAlexW2140208773

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.