Evidence map›Paper›PMID 22808284›Full record

ArticlePloS one2012

Differentially methylated regions of imprinted genes in prenatal, perinatal and postnatal human tissues.

Susan K Murphy, Zhiqing Huang, Cathrine Hoyo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed, 2 pooled it
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 2 syntheses or guidelines pooled it, 148 citations in OpenAlex.

  1. Pooled it
  2. Epigenetics and human obesity.International journal of obesity (2005) · 2015
    Pooled it
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  18. Gestational Cd Exposure in the CD-1 Mouse Sex-Specifically Disrupts Essential Metal Ion Homeostasis.Toxicological sciences : an official journal of the Society of Toxicology · 2022
    Article
  19. Article
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Susan K MurphyDepartment of Obstetrics and Gynecology, Duke University Medical Center, Durham, North Carolina, United States of America. susan.murphy@duke.edu
Zhiqing Huang
Cathrine Hoyo
Duke University · USDuke Medical Center · US

Funding

Nutrition, Deregulation of Imprinted GenesR01ES016772 · NIEHS · DUKE UNIVERSITY · PI HOYO, CATHRINE · 2009 to 2013
$3.1M
Obesity and deregulation of imprinted genes in early lifeR01DK085173 · NIDDK · DUKE UNIVERSITY · PI HOYO, CATHRINE, MURPHY, SUSAN KAY · 2010 to 2013
$2.3M
In-utero Exposure and Infant Loss of IGF2 ImprintingR21ES014947 · NIEHS · DUKE UNIVERSITY · PI HOYO, CATHRINE · 2006 to 2007
$384k
NIDDK NIH HHS R01 DK085173NIDDK NIH HHS R01DK085173NIEHS NIH HHS R01 ES016772NIEHS NIH HHS R01ES016772NIEHS NIH HHS R21 ES014947NIEHS NIH HHS R21ES014947
6 · The paper itself

Abstract

Epigenetic plasticity in relation to in utero exposures may mechanistically explain observed differences in the likelihood of developing common complex diseases including hypertension, diabetes and cardiovascular disease through the cumulative effects of subtle alterations in gene expression. Imprinted genes are essential mediators of growth and development and are characterized by differentially methylated regulatory regions (DMRs) that carry parental allele-specific methylation profiles. This theoretical 50% level of methylation provides a baseline from which endogenously- or exogenously-induced deviations in methylation can be detected. We quantified DNA methylation at imprinted gene DMRs in a large panel of human conceptal tissues, in matched buccal cell specimens collected at birth and at one year of age, and in the major cell fractions of umbilical cord blood to assess the stability of methylation at these regions. DNA methylation was measured using validated pyrosequencing assays at seven DMRs regulating the IGF2/H19, DLK1/MEG3, MEST, NNAT and SGCE/PEG10 imprinted domains. DMR methylation did not significantly differ for the H19, MEST and SGCE/PEG10 DMRs across all conceptal tissues analyzed (ANOVA p>0.10). Methylation differences at several DMRs were observed in tissues from brain (IGF2 and MEG3-IG DMRs), liver (IGF2 and MEG3 DMRs) and placenta (both DLK1/MEG3 DMRs and NNAT DMR). In most infants, methylation profiles in buccal cells at birth and at one year of age were comparable, as was methylation in the major cell fractions of umbilical cord blood. Several infants showed temporal deviations in methylation at multiple DMRs. Similarity of inter-individual and intra-individual methylation at some, but not all of the DMRs analyzed supports the possibility that methylation of these regions can serve as useful biosensors of exposure.

Indexed as

DNA MethylationFetal BloodFetusGenome, HumanGenomic ImprintingHumansInfantInfant, NewbornMouth MucosaOrgan SpecificityPolymerase Chain ReactionReproducibility of ResultsSequence Analysis, DNATime FactorsUmbilical Cord

Identifiers

PMID22808284
PMCPMC3396645
OpenAlexW2032788228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.