Evidence map›Paper›PMID 22807675›Full record

ArticlePLoS pathogens2012

Control of virulence by small RNAs in Streptococcus pneumoniae.

Beth Mann, Tim van Opijnen, Jianmin Wang, Caroline Obert, Yong-Dong Wang, Robert Carter, Daniel J McGoldrick, Granger Ridout, Andrew Camilli, Elaine I Tuomanen and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 166 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Microbiology spectrum · 2026
    Article
  5. A small RNA fromVirulence · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. The five homologous CiaR-controlled Ccn sRNAs ofbioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Identification ofJournal of bacteriology · 2023
    Article
  17. Role of Metabolic Adaptation ofPathogens (Basel, Switzerland) · 2023
    Review
  18. Review
  19. Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Beth MannDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Tim van Opijnen
Jianmin Wang
Caroline Obert
Yong-Dong Wang
Robert Carter
Daniel J McGoldrick
Granger Ridout
Andrew Camilli
Elaine I Tuomanen
Jason W Rosch
St. Jude Children's Research Hospital · USTufts University · US

Funding

Y-Globin Gene Therapy Using In Vivo SelectionU54HL070590 · NHLBI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PERSONS, DEREK A · 2003 to 2011
$13.8M
PNEUMOCOCCAL CELL WALL IN MENINGITISR01AI027913 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI TUOMANEN, ELAINE I · 1989 to 2015
$5.2M
Bacterial cation exporters: a new signaling paradigm for bacterial virulenceF32AI082888 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI ROSCH, JASON W. · 2009 to 2010
$102k
NHLBI NIH HHS U54 HL070590NHLBI NIH HHS U54HL070590NIAID NIH HHS AI27913NIAID NIH HHS F32 AI082888NIAID NIH HHS F32AI082888NIAID NIH HHS R01 AI027913
6 · The paper itself

Abstract

Small noncoding RNAs (sRNAs) play important roles in gene regulation in both prokaryotes and eukaryotes. Thus far, no sRNA has been assigned a definitive role in virulence in the major human pathogen Streptococcus pneumoniae. Based on the potential coding capacity of intergenic regions, we hypothesized that the pneumococcus produces many sRNAs and that they would play an important role in pathogenesis. We describe the application of whole-genome transcriptional sequencing to systematically identify the sRNAs of Streptococcus pneumoniae. Using this approach, we have identified 89 putative sRNAs, 56 of which are newly identified. Furthermore, using targeted genetic approaches and Tn-seq transposon screening, we demonstrate that many of the identified sRNAs have important global and niche-specific roles in virulence. These data constitute the most comprehensive analysis of pneumococcal sRNAs and provide the first evidence of the extensive roles of sRNAs in pneumococcal pathogenesis.

Indexed as

AnimalsBase SequenceGene Expression Regulation, BacterialGene Knockout TechniquesHumansMiceNucleic Acid ConformationPneumococcal InfectionsRNA, BacterialRNA, Small UntranslatedSequence Analysis, RNAStreptococcus pneumoniaeRNA, BacterialRNA, Small Untranslated

Identifiers

PMID22807675
PMCPMC3395615
OpenAlexW1986733693

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.