Evidence map›Paper›PMID 22807295›Full record

ArticleInvestigative ophthalmology & visual science2012

Exclusion of RPGRIP1 ins44 from primary causal association with early-onset cone-rod dystrophy in dogs.

Tatyana Kuznetsova, Simone Iwabe, Kathleen Boesze-Battaglia, Sue Pearce-Kelling, Yim Chang-Min, Kendra McDaid, Keiko Miyadera, Andras Komaromy, Gustavo D Aguirre

Open access · hybridAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

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  10. Review
  11. Dog models for blinding inherited retinal dystrophies.Human gene therapy. Clinical development · 2015
    Review
  12. Article
  13. Leber congenital amaurosis caused by mutations in RPGRIP1.Cold Spring Harbor perspectives in medicine · 2014
    Review
  14. Article
  15. Successful gene therapy in the RPGRIP1-deficient dog: a large model of cone-rod dystrophy.Molecular therapy : the journal of the American Society of Gene Therapy · 2014
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Tatyana KuznetsovaSection of Ophthalmology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Simone Iwabe
Kathleen Boesze-Battaglia
Sue Pearce-Kelling
Yim Chang-Min
Kendra McDaid
Keiko Miyadera
Andras Komaromy
Gustavo D Aguirre
University of Pennsylvania · US

Funding

MODELS OF HEREDITY RETINAL DEGENERATIONR01EY006855 · NEI · UNIVERSITY OF PENNSYLVANIA · PI GUSTAVO David AGUIRRE, William A. Beltran · 1992 to 2026
$20.7M
Scientific TransparencyP30EY001583 · NEI · UNIVERSITY OF PENNSYLVANIA · PI Qi N Cui · 1985 to 2026
$19.5M
Translational Research for Retinal Degeneration TherapiesR01EY017549 · NEI · UNIVERSITY OF PENNSYLVANIA · PI BELTRAN, WILLIAM A. · 2007 to 2024
$14.1M
MEMBRANE FUSION IN RETINAL ROD OUTER SEGMENTSR01EY010420 · NEI · UNIV OF MED/DENT NJ-SCH OSTEOPATHIC MED · PI BOESZE-BATTAGLIA, KATHLEEN · 1999 to 2016
$4.7M
SEARCH FOR NOVEL GENES AND MUTATIONS IN THE RP3 INTERVALR01EY013132 · NEI · UNIVERSITY OF PENNSYLVANIA · PI AGUIRRE, GUSTAVO DAVID · 2000 to 2007
$3.2M
Lysosomal maturation during periodontal infectionsR01DE022465 · NIDCR · UNIVERSITY OF PENNSYLVANIA · PI BOESZE-BATTAGLIA, KATHLEEN · 2012 to 2016
$2.0M
Nikon A1R confocal laser microscope system for live cell imagingS10RR026365 · NCRR · UNIVERSITY OF PENNSYLVANIA · PI BOESZE-BATTAGLIA, KATHLEEN · 2010 to 2010
$500k
A Role for Melanoregulin in RPE-mediated PhagocytosisR21EY018705 · NEI · UNIVERSITY OF PENNSYLVANIA · PI BOESZE-BATTAGLIA, KATHLEEN · 2009 to 2010
$437k
MEMBRANE FUSION IN RETINAL ROD OUTER SEGMENTSR29EY010420 · NEI · UNIV OF MED/DENT NJ-SCH OSTEOPATHIC MED · PI BOESZE-BATTAGLIA, KATHLEEN B · 1994 to 1998
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NCRR NIH HHS S10 RR026365NEI NIH HHS EY-010420NEI NIH HHS EY-018705NEI NIH HHS EY-06855NEI NIH HHS EY-13132NEI NIH HHS EY-17549NEI NIH HHS P30 EY-001583NEI NIH HHS P30 EY001583NEI NIH HHS R01 EY006855NEI NIH HHS R01 EY010420NEI NIH HHS R21 EY018705NEI NIH HHS R29 EY010420NIDCR NIH HHS R01 DE022465
6 · The paper itself

Abstract

purposeCanine cone-rod dystrophy 1 (cord1) has been previously mapped to CFA15, and a homozygous 44-bp insertion in exon 2 (Ins44) of canine RPGRIP1 (cRPGRIP1(Ins/Ins)) has been associated with the disease. However, from the recent identification of a significant discordance in genotype-phenotype association, we have reexamined the role of cRPGRIP1 in cord1.

methodsRetinal structure and function was assessed by clinical retinal examination, noninvasive imaging, electroretinography, and histopathology/immunohistochemistry. cRPGRIP1 splicing was analyzed by RT-PCR. Retinal gene expression was determined by quantitative RT-PCR (qRT-PCR). Five markers spanning the entire cRPGRIP1 were identified and used for haplotyping.

resultsElectroretinography demonstrated that cone responses were absent or present in cRPGRIP1(Ins/Ins) individuals. Moreover, performance in vision testing and optical coherence tomography (OCT) were comparable in cRPGRIP1(Ins/Ins) dogs, regardless of the cone ERG status. While histologic changes in retinal structure were minimal, immunohistochemistry demonstrated a lack of cone opsin labeling in cRPGRIP1(Ins/Ins) dogs. cDNA analysis revealed that Ins44 disrupts a putative exonic splicing enhancer that allows for skipping of exon 2, while retaining the functional RPGR-interacting domain (RID) of the protein. New cRPGRIP1 sequence changes were identified, including a 3-bp deletion affecting the 3' acceptor splice site of alternative exon 19c. The extended haplotype spanning cRPGRIP1 was identical in cRPGRIP1(Ins/Ins) dogs with and without retinal degeneration. Gene expression analysis showed that expression levels were not associated with Ins44 genotype.

conclusionsThe results indicated that cRPGRIP1 Ins44 is an unlikely primary cause of cord1, and that the causal gene and mutation are likely located elsewhere in the critical disease interval.

Indexed as

Alternative SplicingAnimalsDisease Models, AnimalDogsElectroretinographyExonsEye ProteinsFemaleFluorescein AngiographyGenetic Association StudiesHaplotypesHeterozygoteHomozygoteMaleMutationPedigreeEye ProteinsRPGR protein, human

Identifiers

PMID22807295
PMCPMC3422103
OpenAlexW2080407797

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.