Evidence map›Paper›PMID 22806019›Full record

ArticleWorld journal of microbiology & biotechnology2012

Cloning, purification and characterization of an alkali-stable endoxylanase from thermophilic Geobacillus sp. 71.

Sabriye Canakcı, Zeliha Cevher, Kadriye Inan, Muslum Tokgoz, Fatmagul Bahar, Murat Kacagan, Fulya Ay Sal, Ali Osman Belduz

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Article in World journal of microbiology & biotechnology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Metabolic engineering · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Sabriye CanakcıDepartment of Biology, Faculty of Sciences, Karadeniz Technical University, 61080 Trabzon, Turkey. sabriye@ktu.edu.tr
Zeliha Cevher
Kadriye Inan
Muslum Tokgoz
Fatmagul Bahar
Murat Kacagan
Fulya Ay Sal
Ali Osman Belduz
Karadeniz Technical University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gene encoding a xylanase from Geobacillus sp. 71 was isolated, cloned, and sequenced. Purification of the Geobacillus sp 7.1 xylanase, XyzGeo71, following overexpression in E. coli produced an enzyme of 47 kDa with an optimum temperature of 75°C. The optimum pH of the enzyme is 8.0, but it is active over a broad pH range. This protein showed the highest sequence identity (93%) with the xylanase from Geobacillus thermodenitrificans NG80-2. XyzGeo71 contains a catalytic domain that belongs to the glycoside hydrolase family 10 (GH10). XyzGeo71 exhibited good pH stability, remaining stable after treatment with buffers ranging from pH 7.0 to 11.0 for 6 h. Its activity was partially inhibited by Al(3+) and Cu(2+) but strongly inhibited by Hg(2+). The enzyme follows Michaelis-Menten kinetics, with K(m) and V(max) values of 0.425 mg xylan/ml and 500 μmol/min.mg, respectively. The enzyme was free from cellulase activity and degraded xylan in an endo fashion. The action of the enzyme on oat spelt xylan produced xylobiose and xylotetrose.

Indexed as

AlkaliesAvenaCatalytic DomainCloning, MolecularDisaccharidesDNA, BacterialEndo-1,4-beta XylanasesEnzyme InhibitorsEnzyme StabilityEscherichia coliGene ExpressionGeobacillusHydrogen-Ion ConcentrationKineticsMetalsMolecular Sequence DataAlkaliesDisaccharidesDNA, BacterialEndo-1,4-beta XylanasesEnzyme InhibitorsMetalsRecombinant ProteinsXylansxylobiose

Identifiers

PMID22806019
OpenAlexW2041074374

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.