ArticleGenetics and molecular biology2012
Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance.
Article in Genetics and molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 50 citations in OpenAlex.
- Exploring the genetic potential of Pakistani soybean cultivars through RNA-seq based transcriptome analysis.Molecular biology reports · 2022Article
- Multigenerational Exposure to Heat Stress Induces Phenotypic Resilience, and Genetic and Epigenetic Variations inFrontiers in plant science · 2022Article
- Physiological and transcriptome analyses highlight multiple pathways involved in drought stress in Medicago falcata.PloS one · 2022Article
- Article
- Gene expression during development and overexpression after Cercospora kikuchii and salicylic acid challenging indicate defensive roles of the soybean toxin.Plant cell reports · 2020Article
- Benchmarking RNA-seq differential expression analysis methods using spike-in and simulation data.PloS one · 2020Article
- Genome-Wide Analysis of the DYW Subgroup PPR Gene Family and Identification ofInternational journal of molecular sciences · 2019Article
- RNA-Seq analysis of soft rush (Juncus effusus): transcriptome sequencing, de novo assembly, annotation, and polymorphism identification.BMC genomics · 2019Article
- Resistant and susceptible cacao genotypes exhibit defense gene polymorphism and unique early responses to Phytophthora megakarya inoculation.Plant molecular biology · 2019Article
- Gene-based SNP identification and validation in soybean using next-generation transcriptome sequencing.Molecular genetics and genomics : MGG · 2018Article
- Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analyses of pooled RNA-Seq samples in rainbow trout.BMC genomics · 2017Article
- Gene dispersion is the key determinant of the read count bias in differential expression analysis of RNA-seq data.BMC genomics · 2017Article
- Engineering of soybean mosaic virus as a versatile tool for studying protein-protein interactions in soybean.Scientific reports · 2016Article
- Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq.Frontiers in plant science · 2016Article
- Sequencing-based high throughput mutation detection in bread wheat.BMC genomics · 2015Article
- Combination of RNAseq and SNP nanofluidic array reveals the center of genetic diversity of cacao pathogen Moniliophthora roreri in the upper Magdalena Valley of Colombia and its clonality.Frontiers in microbiology · 2015Article
- Article
- Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content.BMC genomics · 2014Article
- Article
- Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals.Frontiers in plant science · 2013Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The legume Glycine max (soybean) plays an important economic role in the international commodities market, with a world production of almost 260 million tons for the 2009/2010 harvest. The increase in drought events in the last decade has caused production losses in recent harvests. This fact compels us to understand the drought tolerance mechanisms in soybean, taking into account its variability among commercial and developing cultivars. In order to identify single nucleotide polymorphisms (SNPs) in genes up-regulated during drought stress, we evaluated suppression subtractive libraries (SSH) from two contrasting cultivars upon water deprivation: sensitive (BR 16) and tolerant (Embrapa 48). A total of 2,222 soybean genes were up-regulated in both cultivars. Our method identified more than 6,000 SNPs in tolerant and sensitive Brazilian cultivars in those drought stress related genes. Among these SNPs, 165 (in 127 genes) are positioned at soybean chromosome ends, including transcription factors (MYB, WRKY) related to tolerance to abiotic stress.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.