ArticleGenetics and molecular biology2012
A web-based bioinformatics interface applied to the GENOSOJA Project: Databases and pipelines.
Article in Genetics and molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Harnessing the Potential of Forage Legumes, Alfalfa, Soybean, and Cowpea for Sustainable Agriculture and Global Food Security.Frontiers in plant science · 2018Review
- Abscisic-acid-dependent basic leucine zipper (bZIP) transcription factors in plant abiotic stress.Protoplasma · 2017Review
- De Novo Transcriptome Analysis for Kentucky Bluegrass Dwarf Mutants Induced by Space Mutation.PloS one · 2016Article
- Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance.BMC plant biology · 2015Article
- Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15.BMC genomics · 2013Article
- Expression patterns of GmAP2/EREB-like transcription factors involved in soybean responses to water deficit.PloS one · 2013Article
- Early transcriptional response of soybean contrasting accessions to root dehydration.PloS one · 2013Article
- Identification and in silico characterization of soybean trihelix-GT and bHLH transcription factors involved in stress responses.Genetics and molecular biology · 2012Article
- Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance.Genetics and molecular biology · 2012Article
- Cell wall, lignin and fatty acid-related transcriptome in soybean: Achieving gene expression patterns for bioenergy legume.Genetics and molecular biology · 2012Article
- In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago.Genetics and molecular biology · 2012Article
- Overall picture of expressed Heat Shock Factors in Glycine max, Lotus japonicus and Medicago truncatula.Genetics and molecular biology · 2012Article
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Authors and funding
5 authors.
Funding
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Abstract
The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.
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