Evidence map›Paper›PMID 22801375›Full record

ArticleMolecular and cellular biology2012

A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells.

Boet van Riel, Tibor Pakozdi, Rutger Brouwer, Rui Monteiro, Kapil Tuladhar, Vedran Franke, Jan Christian Bryne, Ruud Jorna, Erik-Jan Rijkers, Wilfred van Ijcken and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

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  5. Runx1 promotes murine erythroid progenitor proliferation and inhibits differentiation by preventing Pu.1 downregulation.Proceedings of the National Academy of Sciences of the United States of America · 2019
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  20. Gata2 is required for HSC generation and survival.The Journal of experimental medicine · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Boet van RielDepartment of Cell Biology and Center for Biomedical Genetics, Erasmus Medical Center, Rotterdam, Netherlands.
Tibor Pakozdi
Rutger Brouwer
Rui Monteiro
Kapil Tuladhar
Vedran Franke
Jan Christian Bryne
Ruud Jorna
Erik-Jan Rijkers
Wilfred van Ijcken
Charlotte Andrieu-Soler
Jeroen Demmers
Roger Patient
Eric Soler
Boris Lenhard
Frank Grosveld
Erasmus MC · NLUniversity of Bergen · NOUniversity of Oxford · GBCancer Genomics Centre · NLImperial College London · GB

Funding

British Heart Foundation PG/09/082/28020Medical Research Council MC_U137981013Medical Research Council MC_UP_1102/1
6 · The paper itself

Abstract

RUNX1 is known to be an essential transcription factor for generating hematopoietic stem cells (HSC), but much less is known about its role in the downstream process of hematopoietic differentiation. RUNX1 has been shown to be part of a large transcription factor complex, together with LDB1, GATA1, TAL1, and ETO2 (N. Meier et al., Development 133:4913-4923, 2006) in erythroid cells. We used a tagging strategy to show that RUNX1 interacts with two novel protein partners, LSD1 and MYEF2, in erythroid cells. MYEF2 is bound in undifferentiated cells and is lost upon differentiation, whereas LSD1 is bound in differentiated cells. Chromatin immunoprecipitation followed by sequencing (ChIP-seq) and microarray expression analysis were used to show that RUNX1 binds approximately 9,000 target sites in erythroid cells and is primarily active in the undifferentiated state. Functional analysis shows that a subset of the target genes is suppressed by RUNX1 via the newly identified partner MYEF2. Knockdown of Myef2 expression in developing zebrafish results in a reduced number of HSC.

Indexed as

Gene Expression Regulation, DevelopmentalHematopoiesisAnimalsCell Line, TumorCore Binding Factor Alpha 2 SubunitDNAErythroid CellsGene Knockdown TechniquesHistone DemethylasesMiceMorpholinosMultiprotein ComplexesNerve Tissue ProteinsOxidoreductases, N-DemethylatingProtein BindingRepressor ProteinsCore Binding Factor Alpha 2 SubunitDNAHistone DemethylasesKDM1a protein, mouseMorpholinosMultiprotein ComplexesMyef2 protein, mouseMYEF2 protein, zebrafishNerve Tissue ProteinsOxidoreductases, N-DemethylatingRepressor ProteinsZebrafish Proteins

Identifiers

PMID22801375
PMCPMC3457535
OpenAlexW2099228945

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.