Evidence map›Paper›PMID 22799003›Full record

ReviewThe New phytologist2012

Update on sumoylation: defining core components of the plant SUMO conjugation system by phylogenetic comparison.

Maria Novatchkova, Konstantin Tomanov, Kay Hofmann, Hans-Peter Stuible, Andreas Bachmair

Open access · bronzeAbstract readReview
In one paragraph

Review in The New phytologist, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 85 citations in OpenAlex.

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  13. SUMO conjugating enzyme: a vital player of SUMO pathway in plants.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Review
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  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Maria NovatchkovaResearch Institute of Molecular Pathology, Vienna, Austria.
Konstantin Tomanov
Kay Hofmann
Hans-Peter Stuible
Andreas Bachmair
Austrian Academy of Sciences · ATMax Perutz Labs · ATUniversity of Cologne · DEUniversity of Vienna · AT

Funding

Austrian Science Fund FWF P 21215
6 · The paper itself

Abstract

The conjugation of the small ubiquitin-related modifier, SUMO, to substrate proteins is a reversible and dynamic process, and an important response of plants to environmental challenges. Nevertheless, reliable data have so far been restricted largely to the model plant Arabidopsis thaliana. The increasing availability of genome information for other plant species offers the possibility to identify a core set of indispensable components, and to discover species-specific features of the sumoylation pathway. We analyzed the enzymes responsible for the conjugation of SUMO to substrates for their conservation between dicots and monocots. We thus assembled gene sets that relate the Arabidopsis SUMO conjugation system to that of the dicot species tomato, grapevine and poplar, and to four plant species from the monocot class: rice, Brachypodium distachyon, Sorghum bicolor and maize. We found that a core set of genes with clear assignment in Arabidopsis had highly conserved homologs in all tested plants. However, we also observed a variation in the copy number of homologous genes, and sequence variations that suggested monocot-specific variants. Generally, SUMO ligases and proteases showed the most pronounced differences. Finally, we identified potential SUMO chain-binding ubiquitin ligases, pointing to an in vivo function of SUMO chains as degradation signals in plants.

Indexed as

SumoylationArabidopsis ProteinsCysteine EndopeptidasesEnzymesLigasesOryzaPhylogenyPlant ProteinsPlantsPopulusSmall Ubiquitin-Related Modifier ProteinsSorghumZea maysArabidopsis ProteinsAt1g09730 protein, ArabidopsisAt3g48480 protein, ArabidopsisAt4g33620 protein, ArabidopsisCysteine EndopeptidasesEnzymesLigasesPlant ProteinsSIZ1 protein, ArabidopsisSmall Ubiquitin-Related Modifier Proteins

Identifiers

PMID22799003
PMCPMC3399776
OpenAlexW2154837790

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.