Evidence map›Paper›PMID 22798143›Full record

ArticleThe Journal of biological chemistry2012

Role of mismatch repair enzymes in GAA·TTC triplet-repeat expansion in Friedreich ataxia induced pluripotent stem cells.

Jintang Du, Erica Campau, Elisabetta Soragni, Sherman Ku, James W Puckett, Peter B Dervan, Joel M Gottesfeld

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 112 citations in OpenAlex.

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  19. Perspectives on current models of Friedreich's ataxia.Frontiers in cell and developmental biology · 2022
    Article
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jintang DuDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Erica Campau
Elisabetta Soragni
Sherman Ku
James W Puckett
Peter B Dervan
Joel M Gottesfeld
Scripps Research Institute · USCalifornia Institute of Technology · US

Funding

Mechanisms of Gene Silencing of Friedreich's AtaxiaR01NS062856 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI GOTTESFELD, JOEL M. · 2009 to 2018
$4.1M
NIGMS NIH HHS GM275681NINDS NIH HHS NS062856NINDS NIH HHS R01 NS062856
6 · The paper itself

Abstract

The genetic mutation in Friedreich ataxia (FRDA) is a hyperexpansion of the triplet-repeat sequence GAA·TTC within the first intron of the FXN gene. Although yeast and reporter construct models for GAA·TTC triplet-repeat expansion have been reported, studies on FRDA pathogenesis and therapeutic development are limited by the availability of an appropriate cell model in which to study the mechanism of instability of the GAA·TTC triplet repeats in the human genome. Herein, induced pluripotent stem cells (iPSCs) were generated from FRDA patient fibroblasts after transduction with the four transcription factors Oct4, Sox2, Klf4, and c-Myc. These cells were differentiated into neurospheres and neuronal precursors in vitro, providing a valuable cell model for FRDA. During propagation of the iPSCs, GAA·TTC triplet repeats expanded at a rate of about two GAA·TTC triplet repeats/replication. However, GAA·TTC triplet repeats were stable in FRDA fibroblasts and neuronal stem cells. The mismatch repair enzymes MSH2, MSH3, and MSH6, implicated in repeat instability in other triplet-repeat diseases, were highly expressed in pluripotent stem cells compared with fibroblasts and neuronal stem cells and occupied FXN intron 1. In addition, shRNA silencing of MSH2 and MSH6 impeded GAA·TTC triplet-repeat expansion. A specific pyrrole-imidazole polyamide targeting GAA·TTC triplet-repeat DNA partially blocked repeat expansion by displacing MSH2 from FXN intron 1 in FRDA iPSCs. These studies suggest that in FRDA, GAA·TTC triplet-repeat instability occurs in embryonic cells and involves the highly active mismatch repair system.

Indexed as

DNA Mismatch RepairGenome, HumanModels, BiologicalTrinucleotide Repeat ExpansionAnimalsCell DifferentiationCell LineFibroblastsFrataxinFriedreich AtaxiaHumansInduced Pluripotent Stem CellsIntronsIron-Binding ProteinsKruppel-Like Factor 4MiceFrataxinIron-Binding ProteinsKLF4 protein, humanKlf4 protein, mouseKruppel-Like Factor 4MSH2 protein, humanMsh2 protein, mouseMutS Homolog 2 ProteinTranscription Factors

Identifiers

PMID22798143
PMCPMC3436184
OpenAlexW2076592445

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.