Evidence map›Paper›PMID 22797772›Full record

ArticleNature immunology2012

Deciphering the transcriptional network of the dendritic cell lineage.

Jennifer C Miller, Brian D Brown, Tal Shay, Emmanuel L Gautier, Vladimir Jojic, Ariella Cohain, Gaurav Pandey, Marylene Leboeuf, Kutlu G Elpek, Julie Helft and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 463 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
463citing papers in PubMed, 1 pooled it
32.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

463 citing papers in PubMed, 1 synthesis or guideline pooled it, 768 citations in OpenAlex.

  1. Myocardial Immune Cells: The Basis of Cardiac Immunology.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Scalable generation of pure CD103+ cDC1 from iDC1 cultures.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
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  14. Review
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  19. Article
  20. Review

403 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 1 country.

Jennifer C MillerImmunology Institute, Mount Sinai School of Medicine, New York, New York, USA.
Brian D Brown
Tal Shay
Emmanuel L Gautier
Vladimir Jojic
Ariella Cohain
Gaurav Pandey
Marylene Leboeuf
Kutlu G Elpek
Julie Helft
Daigo Hashimoto
Andrew Chow
Jeremy Price
Melanie Greter
Milena Bogunovic
Angelique Bellemare-Pelletier
Paul S Frenette
Gwendalyn J Randolph
Shannon J Turley
Miriam Merad
Immunological Genome Consortium
Icahn School of Medicine at Mount Sinai · USAlbert Einstein College of Medicine · USHarvard University · USBroad Institute · USDana-Farber Cancer Institute · USStanford University · US

Funding

ImmGen: Gene Expression and Regulation in Immune CellsR24AI072073 · NIAID · JOSLIN DIABETES CENTER · PI CHRISTOPHE O. BENOIST · 2007 to 2026
$28.5M
TCR recognition of MHC class II peptide compexes in multiple sclerosisP01AI045757 · NIAID · DANA-FARBER CANCER INSTITUTE · PI KUCHROO, VIJAY K., LOVE, JOHN CHRISTOPHER · 1999 to 2017
$22.8M
MODELING THE ROLE OF PROGRESSION IN FOLLICULAR LYMPHOMAU54CA149145 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2010 to 2014
$12.1M
In Vivo Sickle Cell Vasoocclusion: Adhesion MechanismsR01HL069438 · NHLBI · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI KELLY, LIBUSHA · 2001 to 2024
$9.5M
Regulation and function of hematopoietic stem cell nichesR01DK056638 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GRITSMAN, KIRA · 2000 to 2023
$8.7M
ERK control of Dendritic Cell Differentiation, Homeostasis and DiseaseR01CA154947 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CARL E ALLEN, MIRIAM MERAD · 2011 to 2026
$7.0M
Role of the gut epithelium in pancreatic autoimmunityR01DK074500 · NIDDK · DANA-FARBER CANCER INST · PI HAINING, WILLIAM NICHOLAS · 2007 to 2016
$3.4M
Novel Strategy to Induce Islet Protective Regulatory T Cells and Prevent DiabetesDP2DK083052 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BROWN, BRIAN D · 2008 to 2013
$2.7M
Post-transcriptional regulation of the Dendritic Cell transcriptomeR01AI104848 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BROWN, BRIAN D, MERAD, MIRIAM · 2013 to 2017
$2.3M
Ontogeny of Gut Dendritic Cells in Steady State and Inflamed SettingsR01HL086899 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MERAD, MIRIAM · 2007 to 2011
$2.1M
Contribution of the cutaneous APC network to melanoma progression and therapy.R01CA173861 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MERAD, MIRIAM · 2013 to 2017
$2.1M
Role of mesenchymal stem cells in the blood stem cell nicheR01HL097819 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FRENETTE, PAUL S · 2009 to 2012
$1.7M
NCI NIH HHS R01 CA154947NCI NIH HHS R01 CA173861NCI NIH HHS U54 CA149145NCI NIH HHS U54CA149145NHLBI NIH HHS HL086899NHLBI NIH HHS HL097700NHLBI NIH HHS HL097819NHLBI NIH HHS HL69438NHLBI NIH HHS R01 HL069438NHLBI NIH HHS R01 HL086899NHLBI NIH HHS R01 HL097700NHLBI NIH HHS R01 HL097819NIAID NIH HHS AI045757NIAID NIH HHS AI080884NIAID NIH HHS P01 AI045757NIAID NIH HHS R01 AI080884NIAID NIH HHS R01 AI104848NIAID NIH HHS R24 AI072073NIDDK NIH HHS DK056638NIDDK NIH HHS DK074500NIDDK NIH HHS DP2 DK083052NIDDK NIH HHS DP2DK083052-01NIDDK NIH HHS R01 DK056638NIDDK NIH HHS R01 DK074500
6 · The paper itself

Abstract

Although much progress has been made in the understanding of the ontogeny and function of dendritic cells (DCs), the transcriptional regulation of the lineage commitment and functional specialization of DCs in vivo remains poorly understood. We made a comprehensive comparative analysis of CD8(+), CD103(+), CD11b(+) and plasmacytoid DC subsets, as well as macrophage DC precursors and common DC precursors, across the entire immune system. Here we characterized candidate transcriptional activators involved in the commitment of myeloid progenitor cells to the DC lineage and predicted regulators of DC functional diversity in tissues. We identified a molecular signature that distinguished tissue DCs from macrophages. We also identified a transcriptional program expressed specifically during the steady-state migration of tissue DCs to the draining lymph nodes that may control tolerance to self tissue antigens.

Indexed as

Transcription, GeneticCell DifferentiationCell LineageDendritic CellsGene Expression ProfilingHumans

Identifiers

PMID22797772
PMCPMC3985403
OpenAlexW2133019048

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.