Evidence map›Paper›PMID 22797724›Full record

ArticleNature genetics2012

A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.

Kouya Shiraishi, Hideo Kunitoh, Yataro Daigo, Atsushi Takahashi, Koichi Goto, Hiromi Sakamoto, Sumiko Ohnami, Yoko Shimada, Kyota Ashikawa, Akira Saito and 8 more

Abstract readValidation Study
PubMed Publisher
In one paragraph

Article in Nature genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 22 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 22 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 22 syntheses or guidelines pooled it, 214 citations in OpenAlex.

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  16. Quantitative assessment of common genetic variants on chromosome 5p15 and lung cancer risk.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
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  17. Increased lung cancer risk associated with the TERT rs2736100 polymorphism: an updated meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
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  18. Cleft lip and palate transmembrane protein 1 rs31489 polymorphism is associated with lung cancer risk: a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
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  19. TERT rs2736100 polymorphism contributes to lung cancer risk: a meta-analysis including 49,869 cases and 73,464 controls.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
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53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 3 countries.

Kouya ShiraishiDivision of Genome Biology, National Cancer Center Research Institute, Tokyo, Japan.
Hideo Kunitoh
Yataro Daigo
Atsushi Takahashi
Koichi Goto
Hiromi Sakamoto
Sumiko Ohnami
Yoko Shimada
Kyota Ashikawa
Akira Saito
Shun-ichi Watanabe
Koji Tsuta
Naoyuki Kamatani
Teruhiko Yoshida
Yusuke Nakamura
Jun Yokota
Michiaki Kubo
Takashi Kohno
RIKEN Center for Integrative Medical Sciences · JPNational Cancer Centre Japan · JPTokyo National Hospital · JPMemorial Hospital of South Bend · USNational Cancer Center Hospital East · JPNational Cancer Research Institute · GBShiga University of Medical Science · JPStaGen (Japan) · JPTokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lung adenocarcinoma is the most common histological type of lung cancer, and its incidence is increasing worldwide. To identify genetic factors influencing risk of lung adenocarcinoma, we conducted a genome-wide association study and two validation studies in the Japanese population comprising a total of 6,029 individuals with lung adenocarcinoma (cases) and 13,535 controls. We confirmed two previously reported risk loci, 5p15.33 (rs2853677, P(combined) = 2.8 × 10(-40), odds ratio (OR) = 1.41) and 3q28 (rs10937405, P(combined) = 6.9 × 10(-17), OR = 1.25), and identified two new susceptibility loci, 17q24.3 (rs7216064, P(combined) = 7.4 × 10(-11), OR = 1.20) and 6p21.3 (rs3817963, P(combined) = 2.7 × 10(-10), OR = 1.18). These data provide further evidence supporting a role for genetic susceptibility in the development of lung adenocarcinoma.

Indexed as

AdenocarcinomaAdenocarcinoma of LungAntigens, NuclearAsian PeopleBromodomain Containing ProteinsButyrophilinsCase-Control StudiesGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansJapanLung NeoplasmsMembrane GlycoproteinsNerve Tissue ProteinsPolymorphism, Single NucleotideTranscription FactorsAntigens, NuclearBromodomain Containing ProteinsBTNL2 protein, humanButyrophilinsfetal Alzheimer antigenMembrane GlycoproteinsNerve Tissue ProteinsTranscription Factors

Identifiers

PMID22797724
OpenAlexW1977796312

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.