Evidence map›Paper›PMID 22795131›Full record

ArticleMolecular cell2012

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation.

Tamir Chandra, Kristina Kirschner, Jean-Yves Thuret, Benjamin D Pope, Tyrone Ryba, Scott Newman, Kashif Ahmed, Shamith A Samarajiwa, Rafik Salama, Thomas Carroll and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 207 papers.

0numbers the graph read from it
0cells of the map it votes in
207citing papers in PubMed
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

207 citing papers in PubMed, 309 citations in OpenAlex.

  1. Review
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  10. Biomarkers of ageing of humans and non-human primates.Nature reviews. Molecular cell biology · 2025
    Review
  11. Review
  12. Interrogating the regulatory epigenome of cellular senescence.Cellular and molecular life sciences : CMLS · 2025
    Review
  13. Article
  14. Article
  15. Studying Cellular Senescence Using the Model Organism Drosophila melanogaster.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review

147 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 12 institutions in 5 countries.

Tamir ChandraCancer Research UK Cambridge Research Institute, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK.
Kristina Kirschner
Jean-Yves Thuret
Benjamin D Pope
Tyrone Ryba
Scott Newman
Kashif Ahmed
Shamith A Samarajiwa
Rafik Salama
Thomas Carroll
Rory Stark
Rekin's Janky
Masako Narita
Lixiang Xue
Agustin Chicas
Sabrina Nũnez
Ralf Janknecht
Yoko Hayashi-Takanaka
Michael D Wilson
Aileen Marshall
Duncan T Odom
M Madan Babu
David P Bazett-Jones
Simon Tavaré
Paul A W Edwards
Scott W Lowe
Hiroshi Kimura
David M Gilbert
Masashi Narita
Cancer Research UK · GBUniversity of Cambridge · GBFlorida State University · USHospital for Sick Children · CAMRC Laboratory of Molecular Biology · GBCold Spring Harbor Laboratory · USCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRHoward Hughes Medical Institute · USMemorial Sloan Kettering Cancer Center · USOsaka University · JPUbe Frontier University · JPUniversity of Oklahoma Health Sciences Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
UNDERSTANDING MECHANISMS OF hESC SELF-RENEWAL AND CELL FATE COMMITMENTP01GM085354 · NIGMS · UNIVERSITY OF GEORGIA · PI DALTON, STEPHEN · 2008 to 2018
$18.3M
Genome Plasticity during ES Cell Differentiation to Neural LineagesR01GM083337 · NIGMS · SAN DIEGO BIOMEDICAL RESEARCH INSTITUTE · PI David M Gilbert · 2007 to 2026
$6.1M
Ras Induced Senescence and Tumor SuppressionR01AG016379 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI LOWE, SCOTT W. · 1999 to 2014
$5.6M
Cancer Research UK 14545Cancer Research UK 15603Cancer Research UK 15890Cancer Research UK A15603CIHREuropean Research Council 202218Medical Research Council MC_U105185859NCI NIH HHS P30 CA008748NIA NIH HHS R01 AG016379NIGMS NIH HHS GM083337NIGMS NIH HHS GM085354NIGMS NIH HHS P01 GM085354NIGMS NIH HHS R01 GM083337
6 · The paper itself

Abstract

The expansion of repressive epigenetic marks has been implicated in heterochromatin formation during embryonic development, but the general applicability of this mechanism is unclear. Here we show that nuclear rearrangement of repressive histone marks H3K9me3 and H3K27me3 into nonoverlapping structural layers characterizes senescence-associated heterochromatic foci (SAHF) formation in human fibroblasts. However, the global landscape of these repressive marks remains unchanged upon SAHF formation, suggesting that in somatic cells, heterochromatin can be formed through the spatial repositioning of pre-existing repressively marked histones. This model is reinforced by the correlation of presenescent replication timing with both the subsequent layered structure of SAHFs and the global landscape of the repressive marks, allowing us to integrate microscopic and genomic information. Furthermore, modulation of SAHF structure does not affect the occupancy of these repressive marks, nor vice versa. These experiments reveal that high-order heterochromatin formation and epigenetic remodeling of the genome can be discrete events.

Indexed as

BromodeoxyuridineCellular SenescenceChromatinChromosomesEpigenesis, GeneticFibroblastsGene Expression Regulation, DevelopmentalGene SilencingGenomeGenome-Wide Association StudyHeterochromatinHistonesHumansLaser Scanning CytometryMicroscopy, FluorescenceBromodeoxyuridineChromatinHeterochromatinHistones

Identifiers

PMID22795131
PMCPMC3701408
OpenAlexW2153643905

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.