Evidence map›Paper›PMID 22791832›Full record

ArticleJournal of experimental botany2012

The Arabidopsis organelle-localized glycyl-tRNA synthetase encoded by EMBRYO DEFECTIVE DEVELOPMENT1 is required for organ patterning.

Alexis Moschopoulos, Paul Derbyshire, Mary E Byrne

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental botany, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Mutation of thePlant signaling & behavior · 2021
    Article
  3. Article
  4. Article
  5. The Characterization of ArabidopsisInternational journal of molecular sciences · 2018
    Article
  6. Article
  7. Article
  8. Article
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  11. Article
  12. Review
  13. Article
  14. The Leaf Adaxial-Abaxial Boundary and Lamina Growth.Plants (Basel, Switzerland) · 2013
    Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Alexis MoschopoulosJohn Innes Centre, Norwich, NR4 7UH, UK.
Paul Derbyshire
Mary E Byrne
John Innes Centre · GBUniversity of Sydney · AU

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

Leaves develop as planar organs, with a morphology that is specialized for photosynthesis. Development of a planar leaf requires genetic networks that set up opposing adaxial and abaxial sides of the leaf, which leads to establishment of dorsoventral polarity. While many genes have been identified that regulate adaxial and abaxial fate there is little information on how this is integrated with cellular function. EMBRYO DEFECTIVE DEVELOPMENT1 (EDD1) is a nuclear gene that encodes a plastid and mitochondrial localized glycyl-tRNA synthetase. Plants with partial loss of EDD1 function have changes in patterning of margin and distal regions of the leaf. In combination with mutations in the MYB domain transcription factor gene ASYMMETRIC LEAVES1 (AS1), partial loss of EDD1 function results in leaves with reduced adaxial fate. EDD1 may influence leaf dorsoventral polarity through regulating the abaxial fate genes KANADI1 (KAN1) and ETTIN (ETT)/AUXIN RESPONSE FACTOR3 (ARF3) since these genes are upregulated in the edd1 as1 double mutant. SCABRA3 (SCA3), a nuclear gene that encodes the plastid RNA polymerase is also required for leaf adaxial fate in the absence of AS1. These results add a novel component to networks of genetic regulation of leaf development and suggest that organelles, particularly plastids, are required in leaf patterning. Potentially, signalling from organelles is essential for coordination of different cell fates within the developing leaf.

Indexed as

Gene Expression Regulation, PlantAmino Acyl-tRNA SynthetasesArabidopsisArabidopsis ProteinsDNA-Binding ProteinsGene Expression Regulation, DevelopmentalGlycine-tRNA LigaseMitochondriaMutationNuclear ProteinsPlant LeavesPlastidsTranscription FactorsAmino Acyl-tRNA SynthetasesArabidopsis ProteinsASYMMETRIC LEAVES1 protein, ArabidopsisDNA-Binding Proteinsedd1 protein, ArabidopsisETT protein, ArabidopsisGlycine-tRNA LigaseKANADI protein, ArabidopsisNuclear ProteinsTranscription Factors

Identifiers

PMID22791832
PMCPMC3430996
OpenAlexW2108753020

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.