Evidence map›Paper›PMID 22791048›Full record

ArticleMicrobes and environments2012

High prevalence of qnr and aac(6')-Ib-cr genes in both water-borne environmental bacteria and clinical isolates of Citrobacter freundii in China.

Rong Zhang, Tomoaki Ichijo, Yong-Lu Huang, Jia-Chang Cai, Hong-Wei Zhou, Nobuyasu Yamaguchi, Masao Nasu, Gong-Xiang Chen

Open access · bronzeAbstract read
In one paragraph

Article in Microbes and environments, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Microorganisms · 2021
    Article
  3. Article
  4. Antimicrobial Resistance and Molecular Characterization ofFrontiers in cellular and infection microbiology · 2021
    Article
  5. Article
  6. AnAIMS microbiology · 2020
    Review
  7. Article
  8. Genetic Diversity, Multidrug Resistance, and Virulence ofFrontiers in cellular and infection microbiology · 2018
    Article
  9. Occurrence of Plasmid- and Chromosome-CarriedAntimicrobial agents and chemotherapy · 2017
    Article
  10. Antimicrobial Resistance and Cytotoxicity ofFrontiers in microbiology · 2017
    Article
  11. Article
  12. Article
  13. Mechanisms of drug resistance: quinolone resistance.Annals of the New York Academy of Sciences · 2015
    Review
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Rong ZhangSecond affiliated hospital of Zhejiang University, Zhejiang University, 88 JieFang Rd, Hangzhou 310009, China.
Tomoaki Ichijo
Yong-Lu Huang
Jia-Chang Cai
Hong-Wei Zhou
Nobuyasu Yamaguchi
Masao Nasu
Gong-Xiang Chen
Second Affiliated Hospital of Zhejiang University · CNOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated the prevalence of qnr and aac(6')-Ib-cr genes in water-borne environmental bacteria and in clinical isolates of Enterobacteriaceae, as well as the subtypes of qnr. Environmental bacteria were isolated from surface water samples obtained from 10 different locations in Hangzhou City, and clinical isolates of Citrobacter freundii were isolated from several hospitals in four cities in China. qnrA, qnrB, qnrS, and aac(6')-Ib-cr genes were screened using PCR, and the genotypes were analyzed by DNA sequencing. Ten of the 78 Gram-negative bacilli isolated from water samples were C. freundii and 80% of these isolates carried the qnrB gene. qnrS1 and aac(6')-Ib-cr genes were detected in two Escherichia coli isolates and qnrS2 was detected in one species, Aeromonas punctata. The qnr and aac(6')-Ib-cr genes were present in 75 (72.8%) and 12 (11.6%) of 103 clinical isolates of C. freundii, respectively. Of the clinical C. freundii isolates with the qnr gene, 65 isolates (63.1%) carried qnrB, but only three (2.9%) and one (1.0%) carried qnrA1 and qnrS2, respectively, while five isolates carried both qnrA1 and qnrB, and one isolate carried both qnrS1 and qnrB. The qnrB9 gene was the dominant qnrB subtype, followed by qnrB8 and qnrB6. Southern hybridization studies indicated that the qnr genes are located on different plasmids. Plasmids isolated from both environmental and clinical C. freundii isolates appeared to be homogenous.

Indexed as

Drug Resistance, BacterialGenes, BacterialWater MicrobiologyAnti-Bacterial AgentsChinaCitiesCitrobacter freundiiDNA, BacterialEnterobacteriaceae InfectionsGenotypeMicrobial Sensitivity TestsNucleic Acid HybridizationPlasmidsPolymerase Chain ReactionSequence Analysis, DNAAnti-Bacterial AgentsDNA, Bacterial

Identifiers

PMID22791048
PMCPMC4036021
OpenAlexW2061859668

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.