ReviewMicrobes and environments2012
Extraction of bacterial RNA from soil: challenges and solutions.
Review in Microbes and environments, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
18 citing papers in PubMed.
- Limited effect of short- to mid-term storage conditions on an Australian farmland soil RNA virome.Journal of virology · 2026Article
- Interpreting fungal ecological contributions through taxonomic and functional profiling of metatranscriptomics.IMA fungus · 2026Review
- Quantifying Soil Microbiome Abundance by Metatranscriptomics and Complementary Molecular Techniques-Cross-Validation and Perspectives.Molecular ecology resources · 2025Article
- Optimising RNA extraction for paddy bulk soil samples for metatranscriptome sequencing.BMC research notes · 2025Article
- Supplementation of Saussurea costus root alleviates sodium nitrite-induced hepatorenal toxicity by modulating metabolic profile, inflammation, and apoptosis.Frontiers in pharmacology · 2024Article
- Clearing the air: unraveling past and guiding future research in atmospheric chemosynthesis.Microbiology and molecular biology reviews : MMBR · 2023Review
- Thermophilic methane oxidation is widespread in Aotearoa-New Zealand geothermal fields.Frontiers in microbiology · 2023Article
- Potential of Meta-Omics to Provide Modern Microbial Indicators for Monitoring Soil Quality and Securing Food Production.Frontiers in microbiology · 2022Review
- The guanidine thiocyanate-high EDTA method for total microbial RNA extraction from severely heavy metal-contaminated soils.Microbial biotechnology · 2021Article
- Active Microbiome Structure and Functional Analyses of Freshwater Benthic Biofilm Samples Influenced by RNA Extraction Methods.Frontiers in microbiology · 2021Article
- The Response of Microbial Communities to Peatland Drainage and Rewetting. A Review.Frontiers in microbiology · 2020Review
- Best practices for analysing microbiomes.Nature reviews. Microbiology · 2018Review
- Recommendations for developing and applying genetic tools to assess and manage biological invasions in marine ecosystems.Marine policy · 2017Article
- Transparent DNA/RNA Co-extraction Workflow Protocol Suitable for Inhibitor-Rich Environmental Samples That Focuses on Complete DNA Removal for Transcriptomic Analyses.Frontiers in microbiology · 2016Article
- Soil bacterial community structure responses to precipitation reduction and forest management in forest ecosystems across Germany.PloS one · 2015Article
- A novel function of controlled-release nitrogen fertilizers.Microbes and environments · 2014Article
- Utilization of phytic acid by cooperative interaction in rhizosphere.Microbes and environments · 2013Article
- Rediscovery of the microbial world in microbial ecology.Microbes and environments · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Detection of bacterial gene expression in soil emerged in the early 1990s and provided information on bacterial responses in their original soil environments. As a key procedure in the detection, extraction of bacterial RNA from soil has attracted much interest, and many methods of soil RNA extraction have been reported in the past 20 years. In addition to various RT-PCR-based technologies, new technologies for gene expression analysis, such as microarrays and high-throughput sequencing technologies, have recently been applied to examine bacterial gene expression in soil. These technologies are driving improvements in RNA extraction protocols. In this mini-review, progress in the extraction of bacterial RNA from soil is summarized with emphasis on the major difficulties in the development of methodologies and corresponding strategies to overcome them.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.