Evidence map›Paper›PMID 22789849›Full record

ArticleBiochemical and biophysical research communications2012

Ubiquitin tagged dominant negative induces degradation of B-ZIP proteins.

Eric Rios-Doria, Raghunath Chatterjee, Jianfei Zhao, Vikas Rishi, Charles Vinson

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Eric Rios-DoriaBuilding 37, Room 3128, Laboratory of Metabolism, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Raghunath Chatterjee
Jianfei Zhao
Vikas Rishi
Charles Vinson
National Cancer Institute · USNational Institutes of Health · US

Funding

Gene Regulation and Function: The B-ZIP ProteinsZIABC005271 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI VINSON, CHARLES · 2009 to 2019
$11.2M
Intramural NIH HHS Z99 CA999999
6 · The paper itself

Abstract

B-ZIP transcription factors heterodimerize with dominant negative designs, termed A-ZIPs, in a dimerization specific manner and inhibit its ability to bind DNA. Different A-ZIPs produce unique phenotypes in vivo suggesting that they have distinct B-ZIP heterodimerization partners. However, the identification of the in vivo heterodimerization partners of different A-ZIPs remains problematic. To identify the in vivo heterodimerization partners, a chimeric protein containing two ubiquitin motifs at the N-terminal of the A-ZIP domain was designed. The presence of ubiquitin reduced the concentration of specific co-transfected B-ZIP proteins. The ubiquitin enhanced degradation of the B-ZIP heterodimeric partner is inhibited by the proteasome inhibitor MG-132. These ubiquitin tagged A-ZIP dominant negatives may be more active in vivo because their endogenous heterodimerization partners are degraded more efficiently. This may be a general strategy to identify protein interaction partners.

Indexed as

ProteolysisAmino Acid SequenceAnimalsBasic-Leucine Zipper Transcription FactorsCCAAT-Enhancer-Binding ProteinsCysteine Proteinase InhibitorsGreen Fluorescent ProteinsHumansLeupeptinsMiceMolecular Sequence DataNIH 3T3 CellsProteasome InhibitorsProtein MultimerizationUbiquitinBasic-Leucine Zipper Transcription Factorsbenzyloxycarbonylleucyl-leucyl-leucine aldehydeCCAAT-Enhancer-Binding ProteinsCysteine Proteinase InhibitorsGreen Fluorescent ProteinsLeupeptinsProteasome InhibitorsUbiquitin

Identifiers

PMID22789849
PMCPMC6289058
OpenAlexW2027507007

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.