Evidence map›Paper›PMID 22788966›Full record

ArticleBiochemistry2012

Bacillus anthracis inosine 5'-monophosphate dehydrogenase in action: the first bacterial series of structures of phosphate ion-, substrate-, and product-bound complexes.

Magdalena Makowska-Grzyska, Youngchang Kim, Ruiying Wu, Rosemarie Wilton, Deviprasad R Gollapalli, Ximi K Wang, Rongguang Zhang, Robert Jedrzejczak, Jamey C Mack, Natalia Maltseva and 7 more

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. A journey into the regulatory secrets of theFrontiers in pharmacology · 2024
    Review
  3. Article
  4. The gateway to guanine nucleotides: Allosteric regulation of IMP dehydrogenases.Protein science : a publication of the Protein Society · 2022
    Review
  5. Article
  6. Article
  7. Evaluation of Bronopol and Disulfiram as PotentialMolecules (Basel, Switzerland) · 2020
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Magdalena Makowska-GrzyskaCenter for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue, Chicago, IL 60637, USA.
Youngchang Kim
Ruiying Wu
Rosemarie Wilton
Deviprasad R Gollapalli
Ximi K Wang
Rongguang Zhang
Robert Jedrzejczak
Jamey C Mack
Natalia Maltseva
Rory Mulligan
T Andrew Binkowski
Piotr Gornicki
Misty L Kuhn
Wayne F Anderson
Lizbeth Hedstrom
Andrzej Joachimiak

Funding

Vaccines and Therapies Against BotulismU54AI057153 · NIAID · UNIVERSITY OF CHICAGO · PI SCHLESINGER, LARRY S. · 2003 to 2013
$87.6M
IMPDH-targeted antibiotics for select agentsR01AI093459 · NIAID · BRANDEIS UNIVERSITY · PI HEDSTROM, LIZBETH K. · 2011 to 2015
$5.3M
NIAID NIH HHS AI057153NIAID NIH HHS AI093459-01NIAID NIH HHS HHSN272200700058CNIAID NIH HHS R01 AI093459NIAID NIH HHS U54 AI057153
6 · The paper itself

Abstract

Inosine 5'-monophosphate dehydrogenase (IMPDH) catalyzes the first unique step of the GMP branch of the purine nucleotide biosynthetic pathway. This enzyme is found in organisms of all three kingdoms. IMPDH inhibitors have broad clinical applications in cancer treatment, as antiviral drugs and as immunosuppressants, and have also displayed antibiotic activity. We have determined three crystal structures of Bacillus anthracis IMPDH, in a phosphate ion-bound (termed "apo") form and in complex with its substrate, inosine 5'-monophosphate (IMP), and product, xanthosine 5'-monophosphate (XMP). This is the first example of a bacterial IMPDH in more than one state from the same organism. Furthermore, for the first time for a prokaryotic enzyme, the entire active site flap, containing the conserved Arg-Tyr dyad, is clearly visible in the structure of the apoenzyme. Kinetic parameters for the enzymatic reaction were also determined, and the inhibitory effect of XMP and mycophenolic acid (MPA) has been studied. In addition, the inhibitory potential of two known Cryptosporidium parvum IMPDH inhibitors was examined for the B. anthracis enzyme and compared with those of three bacterial IMPDHs from Campylobacter jejuni, Clostridium perfringens, and Vibrio cholerae. The structures contribute to the characterization of the active site and design of inhibitors that specifically target B. anthracis and other microbial IMPDH enzymes.

Indexed as

Amino Acid SequenceApoenzymesBacillus anthracisBenzimidazolesCatalytic DomainEnzyme InhibitorsIMP DehydrogenaseInosine MonophosphateModels, MolecularMolecular Sequence DataMycophenolic AcidNADProtein BindingRibonucleotidesTriazolesXanthineApoenzymesbenzimidazoleBenzimidazolesEnzyme InhibitorsIMP DehydrogenaseInosine MonophosphateMycophenolic AcidNADRibonucleotidesTriazolesXanthinexanthosine monophosphate

Identifiers

PMID22788966
PMCPMC3836674

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.