Evidence map›Paper›PMID 22787213›Full record

ArticleJournal of virology2012

Signatures of host mRNA 5' terminus for efficient hantavirus cap snatching.

Erdong Cheng, Mohammad A Mir

Abstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Remodelling of P-bodies and the cytoskeleton byThe Journal of general virology · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Hantavirus Induced Kidney Disease.Frontiers in medicine · 2021
    Review
  16. The molecular virology of coronaviruses.The Journal of biological chemistry · 2020
    Review
  17. RNA regulatory processes in RNA virus biology.Wiley interdisciplinary reviews. RNA · 2019
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Erdong ChengDepartment of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, Kansas, USA.
Mohammad A Mir

Funding

Identification and characterization of inhibitors for hantavirus replicationR01AI095236 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI MIR, MOHAMMAD A · 2011 to 2013
$1.1M
Role of Cellular P-bodies and Hantavirus Nucleocapsid Protein in Viral mRNA "capR21AI083672 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI MIR, MOHAMMAD A · 2009 to 2010
$413k
NIAID NIH HHS 5R01AI095236-02NIAID NIH HHS 5R21AI083672-02NIAID NIH HHS R01 AI095236NIAID NIH HHS R21 AI083672
6 · The paper itself

Abstract

Hantaviruses, similarly to other negative-strand segmented RNA viruses, initiate the synthesis of translation-competent capped mRNAs by a unique cap-snatching mechanism. Hantavirus nucleocapsid protein (N) binds to host mRNA caps and requires four nucleotides adjacent to the 5' cap for high-affinity binding. N protects the 5' caps of cellular transcripts from degradation by the cellular decapping machinery. The rescued 5' capped mRNA fragments are stored in cellular P bodies by N, which are later efficiently used as primers by the hantaviral RNA-dependent RNA polymerase (RdRp) for transcription initiation. We showed that N also protects the host mRNA caps in P-body-deficient cells. However, the rescued caps were not effectively used by the hantavirus RdRp during transcription initiation, suggesting that caps stored in cellular P bodies by N are preferred for cap snatching. We examined the characteristics of the 5' terminus of a capped test mRNA to delineate the minimum requirements for a capped transcript to serve as an efficient cap donor during hantavirus cap snatching. We showed that hantavirus RdRp preferentially snatches caps from the nonsense mRNAs compared to mRNAs engaged in translation. Hantavirus RdRp preferentially cleaves the cap donor mRNA at a G residue located 14 nucleotides downstream of the 5' cap. The sequence complementarity between the 3' terminus of viral genomic RNA and the nucleotides located in the vicinity of the cleavage site of the cap donor mRNA favors cap snatching. Our results show that hantavirus RdRp snatches caps from viral mRNAs. However, the negligible cap-donating efficiency of wild-type mRNAs in comparison to nonsense mRNAs suggests that viral mRNAs will not be efficiently used for cap snatching during viral infection due to their continuous engagement in protein synthesis. Our results suggest that efficiency of an mRNA to donate caps for viral mRNA synthesis is primarily regulated at the translational level.

Indexed as

AnimalsBase SequenceBinding SitesChlorocebus aethiopsCodon, NonsenseGene Knockdown TechniquesGenome, ViralHost-Pathogen InteractionsHumansModels, BiologicalNucleocapsid ProteinsOrthohantavirusProtein BiosynthesisRNA CapsRNA-Dependent RNA PolymeraseRNA, MessengerCodon, NonsenseNucleocapsid ProteinsRNA CapsRNA-Dependent RNA PolymeraseRNA, MessengerRNA, Small InterferingRNA, Viral

Identifiers

PMID22787213
PMCPMC3446632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.