Evidence map›Paper›PMID 22787159›Full record

ArticleThe Journal of biological chemistry2012

The Werner syndrome protein promotes CAG/CTG repeat stability by resolving large (CAG)(n)/(CTG)(n) hairpins.

Nelson L S Chan, Caixia Hou, Tianyi Zhang, Fenghua Yuan, Amrita Machwe, Jian Huang, David K Orren, Liya Gu, Guo-Min Li

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Creation and resolution of non-B-DNA structural impediments during replication.Critical reviews in biochemistry and molecular biology · 2022
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Mechanisms of genetic instability caused by (CGG)Nature structural & molecular biology · 2018
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Repeat instability during DNA repair: Insights from model systems.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Nelson L S ChanGraduate Center for Toxicology and Markey Cancer Center, University of Kentucky College of Medicine, Lexington, KY 40536, USA.
Caixia Hou
Tianyi Zhang
Fenghua Yuan
Amrita Machwe
Jian Huang
David K Orren
Liya Gu
Guo-Min Li
University of Kentucky · USWuhan University · CNMarkey Cancer Center · USThe Graduate Center, CUNY · US

Funding

DNA Mismatch Repair Deficiency and Leukemia RelapseR01CA104333 · NCI · UNIVERSITY OF KENTUCKY · PI GU, LIYA · 2005 to 2010
$1.3M
DNA repair mechanisms in trinucleotide repeat instabilityR01GM089684 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LI, GUO-MIN · 2010 to 2013
$1.2M
Biochemical basis of WRN and RecQ helicase functionR01CA113371 · NCI · UNIVERSITY OF KENTUCKY · PI ORREN, DAVID KEITH · 2004 to 2007
$989k
Telomeric dysfunction and the premature aging and cancer-prone disease Werner synR01AG027258 · NIA · UNIVERSITY OF KENTUCKY · PI ORREN, DAVID KEITH · 2008 to 2011
$947k
NCI NIH HHS CA104333NCI NIH HHS R01 CA104333NCI NIH HHS R01 CA113371NIA NIH HHS AG027258NIA NIH HHS R01 AG027258NIGMS NIH HHS GM089684NIGMS NIH HHS R01 GM089684
6 · The paper itself

Abstract

Expansion of CAG/CTG repeats causes certain neurological and neurodegenerative disorders, and the formation and subsequent persistence of stable DNA hairpins within these repeats are believed to contribute to CAG/CTG repeat instability. Human cells possess a DNA hairpin repair (HPR) pathway, which removes various (CAG)(n) and (CTG)(n) hairpins in a nick-directed and strand-specific manner. Interestingly, this HPR system processes a (CTG)(n) hairpin on the template DNA strand much less efficiently than a (CAG)(n) hairpin on the same strand (Hou, C., Chan, N. L., Gu, L., and Li, G. M. (2009) Incision-dependent and error-free repair of (CAG)(n)/(CTG)(n) hairpins in human cell extracts. Nat. Struct. Mol. Biol. 16, 869-875), suggesting the involvement of an additional component for (CTG)(n) HPR. To identify this activity, a functional in vitro HPR assay was used to screen partially purified HeLa nuclear fractions for their ability to stimulate (CTG)(n) HPR. We demonstrate here that the stimulating activity is the Werner syndrome protein (WRN). Although WRN contains both a 3'→5' helicase activity and a 3'→5' exonuclease activity, the stimulating activity was found to be the helicase activity, as a WRN helicase mutant failed to enhance (CTG)(n) HPR. Consistently, WRN efficiently unwound large (CTG)(n) hairpins and promoted DNA polymerase δ-catalyzed DNA synthesis using a (CTG)(n) hairpin as a template. We, therefore, conclude that WRN stimulates (CTG)(n) HPR on the template DNA strand by resolving the hairpin so that it can be efficiently used as a template for repair or replicative synthesis.

Indexed as

DNA ReplicationInverted Repeat SequencesTrinucleotide Repeat ExpansionDNADNA Polymerase IIIExodeoxyribonucleasesHeLa CellsHumansRecQ HelicasesWerner Syndrome HelicaseDNADNA Polymerase IIIExodeoxyribonucleasesRecQ HelicasesWerner Syndrome HelicaseWRN protein, human

Identifiers

PMID22787159
PMCPMC3436269
OpenAlexW1991918564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.