Evidence map›Paper›PMID 22786898›Full record

ArticleInvestigative ophthalmology & visual science2012

Differences in gene expression between strabismic and normal human extraocular muscles.

Amy L Altick, Cheng-Yuan Feng, Karen Schlauch, L Alan Johnson, Christopher S von Bartheld

Open access · hybridAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 52 citations in OpenAlex.

  1. A Shared Genetic Basis Underlying Myopia-Exotropia Comorbidity.Investigative ophthalmology & visual science · 2026
    Article
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  11. Clinical significance of CTGF and Cry61 protein in extraocular muscles of strabismic patients.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2023
    Article
  12. Article
  13. Comitant strabismus etiology: extraocular muscle integrity and central nervous system involvement-a narrative review.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2023
    Review
  14. Article
  15. Association ofMolecular vision · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Amy L AltickDepartment of Physiology & Cell Biology, University of Nevada School of Medicine, Reno, NV 89557, USA.
Cheng-Yuan Feng
Karen Schlauch
L Alan Johnson
Christopher S von Bartheld
University of Nevada, Reno · USSierra Eye Associates · US

Funding

Outreach/Diversity/Pipeline ProjectP20GM103440 · NIGMS · UNIVERSITY OF NEVADA RENO · PI Julia Petereit · 2012 to 2026
$58.0M
UNDERGRADUATE RESEARCH AND TRAININGP20RR016464 · NCRR · UNIVERSITY OF NEVADA RENO · PI REIBER, CARL · 2001 to 2011
$30.3M
Cell Biology of Signaling across MembranesP20GM103554 · NIGMS · UNIVERSITY OF NEVADA RENO · PI VON BARTHELD, CHRISTOPHER S · 2012 to 2016
$8.0M
CELL BIOLOGY OF SIGNALING ACROSS MEMBRANESP20RR024210 · NCRR · UNIVERSITY OF NEVADA RENO · PI VON BARTHELD, CHRISTOPHER S · 2011 to 2011
$2.1M
TROPHIC MANIPULATIONS OF THE OCULOMOTOR SYSTEMR01EY012841 · NEI · UNIVERSITY OF NEVADA RENO · PI VON BARTHELD, CHRISTOPHER S · 2000 to 2010
$2.0M
NCRR NIH HHS P20 RR016464NCRR NIH HHS P20 RR024210NEI NIH HHS R01 EY012841NIGMS NIH HHS P20 GM103440NIGMS NIH HHS P20 GM103554
6 · The paper itself

Abstract

purposeStrabismic extraocular muscles (EOMs) differ from normal EOMs in structural and functional properties, but the gene expression profile of these two types of EOM has not been examined. Differences in gene expression may inform about causes and effects of the strabismic condition in humans.

methodsEOM samples were obtained during corrective surgery from patients with horizontal strabismus and from deceased organ donors with normal EOMs. Microarrays and quantitative PCR identified significantly up- and down-regulated genes in EOM samples. Analysis was performed on probe sets with more than 3-fold differential expression between normal and strabismic samples, with an adjusted P value of ≤ 0.05.

resultsMicroarray analysis showed that 604 genes in these samples had significantly different expression. Expression predominantly was upregulated in genes involved in extracellular matrix structure, and down-regulated in genes related to contractility. Expression of genes associated with signaling, calcium handling, mitochondria function and biogenesis, and energy homeostasis also was significantly different between normal and strabismic EOM. Skeletal muscle PCR array identified 22 (25%) of 87 muscle-specific genes that were significantly down-regulated in strabismic EOMs; none was significantly upregulated.

conclusionsDifferences in gene expression between strabismic and normal human EOMs point to a relevant contribution of the peripheral oculomotor system to the strabismic condition. Decreases in expression of contractility genes and increases of extracellular matrix-associated genes indicate imbalances in EOM structure. We conclude that gene regulation of proteins fundamental to contractile mechanics and extracellular matrix structure is involved in pathogenesis and/or consequences of strabismus, suggesting potential novel therapeutic targets.

Indexed as

AdolescentAdultChildExtracellular Matrix ProteinsFemaleGene Expression RegulationHumansMaleMiddle AgedOculomotor MusclesOligonucleotide Array Sequence AnalysisReal-Time Polymerase Chain ReactionRNA, MessengerStrabismusYoung AdultExtracellular Matrix ProteinsRNA, Messenger

Identifiers

PMID22786898
PMCPMC3416046
OpenAlexW2052212968

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.