Evidence map›Paper›PMID 22786870›Full record

ArticleThe Plant cell2012

The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis.

Jehad Shaikhali, Juan de Dios Barajas-Lopéz, Krisztina Ötvös, Dmitry Kremnev, Ana Sánchez Garcia, Vaibhav Srivastava, Gunnar Wingsle, Laszlo Bako, Åsa Strand

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 95 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Frontiers in plant science · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. New Insights into the TIFY Gene Family ofInternational journal of molecular sciences · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Signaling Mechanisms by Arabidopsis Cryptochromes.Frontiers in plant science · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Jehad ShaikhaliUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, S-901 87 Umea, Sweden.
Juan de Dios Barajas-Lopéz
Krisztina Ötvös
Dmitry Kremnev
Ana Sánchez Garcia
Vaibhav Srivastava
Gunnar Wingsle
Laszlo Bako
Åsa Strand
Umeå University · SESwedish University of Agricultural Sciences · SEHUN-REN Szegedi Biológiai Kutatóközpont · HUUmeå Plant Science Centre · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exposure of plants to light intensities that exceed the electron utilization capacity of the chloroplast has a dramatic impact on nuclear gene expression. The photoreceptor Cryptochrome 1 (cry1) is essential to the induction of genes encoding photoprotective components in Arabidopsis thaliana. Bioinformatic analysis of the cry1 regulon revealed the putative cis-element CryR1 (GnTCKAG), and here we demonstrate an interaction between CryR1 and the zinc finger GATA-type transcription factors ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 (ZML1) and ZML2. The ZML proteins specifically bind to the CryR1 cis-element as demonstrated in vitro and in vivo, and TCTAG was shown to constitute the core sequence required for ZML2 binding. In addition, ZML2 activated transcription of the yellow fluorescent protein reporter gene driven by the CryR1 cis-element in Arabidopsis leaf protoplasts. T-DNA insertion lines for ZML2 and its homolog ZML1 demonstrated misregulation of several cry1-dependent genes in response to excess light. Furthermore, the zml1 and zml2 T-DNA insertion lines displayed a high irradiance-sensitive phenotype with significant photoinactivation of photosystem II (PSII), indicated by reduced maximum quantum efficiency of PSII, and severe photobleaching. Thus, we identified the ZML2 and ZML1 GATA transcription factors as two essential components of the cry1-mediated photoprotective response.

Indexed as

LightArabidopsisArabidopsis ProteinsCryptochromesDNA-Binding ProteinsGATA Transcription FactorsGene Expression Regulation, PlantInflorescenceMeristemModels, MolecularMutagenesis, InsertionalPhenotypePhotosystem II Protein ComplexProtein Interaction MappingProtein MultimerizationReactive Oxygen SpeciesArabidopsis ProteinsCRY1 protein, ArabidopsisCryptochromesDNA-Binding ProteinsGATA Transcription FactorsPhotosystem II Protein ComplexReactive Oxygen SpeciesRecombinant Fusion ProteinsTranscription FactorsZML1 protein, ArabidopsisZML2 protein, Arabidopsis

Identifiers

PMID22786870
PMCPMC3426129
OpenAlexW2162823246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.