Evidence map›Paper›PMID 22782896›Full record

ArticleThe Journal of biological chemistry2012

A retroelement modifies pre-mRNA splicing: the murine Glrb(spa) allele is a splicing signal polymorphism amplified by long interspersed nuclear element insertion.

Kristina Becker, Marlen Braune, Natalya Benderska, Emanuele Buratti, Francisco Baralle, Carmen Villmann, Stefan Stamm, Volker Eulenburg, Cord-Michael Becker

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Anxiety and Startle Phenotypes inFrontiers in molecular neuroscience · 2020
    Article
  4. Review
  5. Article
  6. Impaired Glycine Receptor Trafficking in Neurological Diseases.Frontiers in molecular neuroscience · 2018
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Inhibitory glycine receptors: an update.The Journal of biological chemistry · 2012
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Kristina BeckerInstitut für Biochemie, Emil Fischer Zentrum, Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.
Marlen Braune
Natalya Benderska
Emanuele Buratti
Francisco Baralle
Carmen Villmann
Stefan Stamm
Volker Eulenburg
Cord-Michael Becker
Friedrich-Alexander-Universität Erlangen-Nürnberg · DEInternational Centre for Genetic Engineering and Biotechnology · IT

Funding

Regulation of alternative pre-mRNA processing by small nucleolar RNAsR01GM083187 · NIGMS · UNIVERSITY OF KENTUCKY · PI STAMM, STEFAN · 2009 to 2012
$1.1M
NIGMS NIH HHS GM083187NIGMS NIH HHS R01 GM083187
6 · The paper itself

Abstract

The glycine receptor-deficient mutant mouse spastic carries a full-length long interspersed nuclear element (LINE1) retrotransposon in intron 6 of the glycine receptor β subunit gene, Glrb(spa). The mutation arose in the C57BL/6J strain and is associated with skipping of exon 6 or a combination of the exons 5 and 6, thus resulting in a translational frameshift within the coding regions of the GlyR β subunit. The effect of the Glrb(spa) LINE1 insertion on pre-mRNA splicing was studied using a minigene approach. Sequence comparison as well as motif prediction and mutational analysis revealed that in addition to the LINE1 insertion the inactivation of an exonic splicing enhancer (ESE) within exon 6 is required for skipping of exon 6. Reconstitution of the ESE by substitution of a single residue was sufficient to prevent exon skipping. In addition to the ESE, two regions within the 5' and 3' UTR of the LINE1 were shown to be critical determinants for exon skipping, indicating that LINE1 acts as efficient modifier of subtle endogenous splicing phenotypes. Thus, the spastic allele of the murine glycine receptor β subunit gene is a two-hit mutation, where the hypomorphic alteration in an ESE is amplified by the insertion of a LINE1 element in the adjacent intron. Conversely, the LINE1 effect on splicing may be modulated by individual polymorphisms, depending on the insertional environment within the host genome.

Indexed as

AllelesPolymorphism, Genetic3' Untranslated Regions5' Untranslated RegionsAnimalsExonsHEK293 CellsHumansIntronsLong Interspersed Nucleotide ElementsMiceMice, Mutant StrainsMutationReceptors, GlycineRNA PrecursorsRNA Splicing3' Untranslated Regions5' Untranslated RegionsGlrb protein, mouseReceptors, GlycineRNA Precursors

Identifiers

PMID22782896
PMCPMC3438950
OpenAlexW1989490298

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.