Evidence map›Paper›PMID 22778399›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Inactivation of a single gene enables microaerobic growth of the obligate anaerobe Bacteroides fragilis.

Brian M Meehan, Anthony D Baughn, Rene Gallegos, Michael H Malamy

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

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  12. OScientific reports · 2018
    Article
  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Brian M MeehanDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA 02111, USA.
Anthony D Baughn
Rene Gallegos
Michael H Malamy
Tufts University · US

Funding

GENETIC SYSTEMS TO STUDY VIRULENCE IN B FRAGILISR01AI019497 · NIAID · TUFTS UNIVERSITY BOSTON · PI MALAMY, MICHAEL H · 1985 to 2008
$2.6M
Genetic System to Study Virulence in BacteroidesR21AI019497 · NIAID · TUFTS UNIVERSITY BOSTON · PI MALAMY, MICHAEL H · 2003 to 2003
$390k
NIAID NIH HHS AI-19497NIAID NIH HHS R01 AI019497NIAID NIH HHS R21 AI019497
6 · The paper itself

Abstract

Bacteroides fragilis can replicate in atmospheres containing ≤0.05% oxygen, but higher concentrations arrest growth by an unknown mechanism. Here we show that inactivation of a single gene, oxe (i.e., oxygen enabled) in B. fragilis allows for growth in concentrations as high as 2% oxygen while increasing the tolerance of this organism to room air. Known components of the oxidative stress response including the ahpC, kat, batA-E, and tpx genes were not individually important for microaerobic growth. However, a Δoxe strain scavenged H(2)O(2) at a faster rate than WT, indicating that reactive oxygen species may play a critical role in limiting growth of this organism to low-oxygen environments. Clinical isolates of B. fragilis displayed a greater capacity for growth under microaerobic conditions than fecal isolates, with some encoding polymorphisms in oxe. Additionally, isolation of oxygen-enabled mutants of Bacteroides thetaiotaomicron suggests that Oxe may mediate growth arrest of other anaerobes in oxygenated environments.

Indexed as

Gene SilencingAnaerobiosisBacteroides fragilisDNA PrimersGenes, BacterialHydrogen PeroxideOxidative StressOxygenPlasmidsReactive Oxygen SpeciesSequence Analysis, DNASpecies SpecificityDNA PrimersHydrogen PeroxideOxygenReactive Oxygen Species

Identifiers

PMID22778399
PMCPMC3409759
OpenAlexW2088134155

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.