Evidence map›Paper›PMID 22777821›Full record

ArticleYeast (Chichester, England)2012

Analysis of protein function in clinical C. albicans isolates.

Maryam Gerami-Nejad, Anja Forche, Mark McClellan, Judith Berman

Open access · greenAbstract read
In one paragraph

Article in Yeast (Chichester, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  3. Article
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  6. Article
  7. Article
  8. mBio · 2018
    Article
  9. Maize Transposable ElementsG3 (Bethesda, Md.) · 2018
    Article
  10. Article
  11. Generation of Fluorescent Protein Fusions in Candida Species.Journal of visualized experiments : JoVE · 2017
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Maryam Gerami-NejadDepartment of Genetics, Cell Biology and Development, University of Minnesota, Minneapolis, MN 55455, USA.
Anja Forche
Mark McClellan
Judith Berman
University of Minnesota · USBowdoin College · US

Funding

Genome Integrity in Candida albicansR01AI062427 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BERMAN, JUDITH G. · 2005 to 2014
$3.6M
Centromere Structure and Function in Candida albicansR01AI075096 · NIAID · UNIVERSITY OF MINNESOTA · PI BERMAN, JUDITH G. · 2008 to 2012
$2.6M
NIAID NIH HHS R01 AI062427NIAID NIH HHS R01AI0624273NIAID NIH HHS R01 AI075096NIAID NIH HHS R01AI075096
6 · The paper itself

Abstract

Clinical isolates are prototrophic and hence are not amenable to genetic manipulation using nutritional markers. Here we describe a new set of plasmids carrying the NAT1 (nourseothricin) drug resistance marker (Shen et al., ), which can be used both in clinical isolates and in laboratory strains. We constructed novel plasmids containing HA-NAT1 or MYC-NAT1 cassettes to facilitate PCR-mediated construction of strains with C-terminal epitope-tagged proteins and a NAT1-pMet3-GFP plasmid to enable conditional expression of proteins with or without the green fluorescent protein fused at the N-terminus. Furthermore, for proteins that require both the endogenous N- and C-termini for function, we have constructed a GF-NAT1-FP cassette carrying truncated alleles that facilitate insertion of an intact, single copy of GFP internal to the coding sequence. In addition, GFP-NAT1, RFP-NAT1 and M-Cherry-NAT1 plasmids were constructed, expressing two differently labelled gene products for the study of protein co-expression and co-localization in vivo. Together, these vectors provide a useful set of genetic tools for studying diverse aspects of gene function in both clinical and laboratory strains of C. albicans.

Indexed as

Candida albicansCandidiasisFungal ProteinsGene ExpressionGenetic EngineeringGenetics, MicrobialGenetic VectorsMutagenesis, InsertionalPlasmidsRecombinant ProteinsRecombination, GeneticSelection, GeneticFungal ProteinsRecombinant Proteins

Identifiers

PMID22777821
PMCPMC3449217
OpenAlexW1683158483

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.