Evidence map›Paper›PMID 22776406›Full record

ArticleBMC plant biology2012

Characterization of a set of novel meiotically-active promoters in Arabidopsis.

Junhua Li, Andrew D Farmer, Ingrid E Lindquist, Stefanie Dukowic-Schulze, Joann Mudge, Tao Li, Ernest F Retzel, Changbin Chen

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The meiotic transcriptome architecture of plants.Frontiers in plant science · 2014
    Review
  13. Article
  14. Regulation of meiotic gene expression in plants.Frontiers in plant science · 2014
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Junhua LiDepartment of Horticultural Science, University of Minnesota, St, Paul, MN 55108, USA.
Andrew D Farmer
Ingrid E Lindquist
Stefanie Dukowic-Schulze
Joann Mudge
Tao Li
Ernest F Retzel
Changbin Chen
National Center for Genome Resources · USUniversity of Minnesota · USHenan Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHomologous recombination, together with selection, laid the foundation for traditional plant breeding. The recombination process that takes place during meiotic cell division is crucial for the creation of novel variations of highly desired traits by breeders. Gaining control over this process is important for molecular breeding to achieve more precise, large-scale and quicker plant improvement. As conventional ubiquitous promoters are neither tissue-specific nor efficient in driving gene expression in meiocytes, promoters with high meiotic activities are potential candidates for manipulating the recombination process. So far, only a few meiotically-active promoters have been reported. Recently developed techniques to profile the transcriptome landscape of isolated meiocytes provided the means to discover promoters from genes that are actively expressed in meiosis.

resultsIn a screen for meiotically-active promoters, we examined ten promoter sequences that are associated with novel meiotic candidate genes. Each promoter was tested by expressing a GFP reporter gene in Arabidopsis. Characterization of regulatory regions revealed that these meiotically-active promoters possessed conserved motifs and motif arrangement. Some of the promoters unite optimal properties which are invaluable for meiosis-directed studies such as delivering specific gene expression in early meiosis I and/or meiosis II. Furthermore, the examination of homologs of the corresponding genes within green plants points to a great potential of applying the information from Arabidopsis to other species, especially crop plants.

conclusionsWe identified ten novel meiotically-active promoters; which, along with their homologs, are prime candidates to specifically drive gene expression during meiosis in plants and can thus provide important tools for meiosis study and crop breeding.

Indexed as

Gene Expression Regulation, PlantMeiosisPromoter Regions, GeneticArabidopsisArabidopsis ProteinsBase SequenceChromosomes, PlantDNA, PlantGene Expression ProfilingGenes, PlantGenes, ReporterGreen Fluorescent ProteinsHomologous RecombinationNucleotide MotifsSpecies SpecificityTranscription, GeneticArabidopsis ProteinsDNA, PlantGreen Fluorescent Proteins

Identifiers

PMID22776406
PMCPMC3462685
OpenAlexW2010473670

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.