Evidence map›Paper›PMID 22776165›Full record

ArticleVirology2012

Identification of multiple RIG-I-specific pathogen associated molecular patterns within the West Nile virus genome and antigenome.

Jennifer German Shipley, Rianna Vandergaast, Lu Deng, Roy A Mariuzza, Brenda L Fredericksen

Open access · greenAbstract read
In one paragraph

Article in Virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. The neuroimmune response to West Nile virus.Journal of neurovirology · 2014
    Review
  8. Article
  9. Review
  10. Antiviral macrophage responses in flavivirus encephalitis.The Indian journal of medical research · 2013
    Review
  11. Article
  12. Review
  13. Review
  14. West Nile virus infection and immunity.Nature reviews. Microbiology · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jennifer German ShipleyDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, United States.
Rianna Vandergaast
Lu Deng
Roy A Mariuzza
Brenda L Fredericksen
University of Maryland, College Park · USAdvanced Bioscience Laboratories (United States) · US

Funding

STRUCTURE AND FUNCTION OF NATURAL KILLER CELL RECEPTORSR01AI047990 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI MARIUZZA, ROY A · 2000 to 2014
$4.1M
West Nile virus interactions with the innate antiviral responseR01AI083397 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI FREDERICKSEN, BRENDA L. · 2009 to 2012
$1.3M
NIAID NIH HHS AI047990NIAID NIH HHS AI083397NIAID NIH HHS R01 AI047990NIAID NIH HHS R01 AI083397
6 · The paper itself

Abstract

The ability of viruses to control and/or evade the host antiviral response is critical to the establishment of a productive infection. One of the strategies utilized by West Nile virus (WNV) to circumvent the host response is to evade detection by the pathogen recognition receptor RIG-I early in infection. To begin elucidating the mechanisms by which WNV eludes detection, we undertook a systematic analysis of the WNV genome and antigenome to identify RIG-I-specific pathogen associated molecular patterns (PAMPs). Multiple segments of the WNV genome and anitigenome induced a RIG-I-specific antiviral response. However, incorporation of the stimulatory regions into larger RNAs substantially reduced their capacity to activate RIG-I. These results suggested that WNV evades the host response by sequestering RIG-I-specific PAMPs within the complete genome and antigenome at early times post-infection. Furthermore, activation of the RIG-I pathway may require the liberation of PAMPs by the cell's normal RNA processing pathways.

Indexed as

Genome, ViralCell LineDEAD Box Protein 58DEAD-box RNA HelicasesHumansImmune EvasionReceptors, ImmunologicWest Nile virusDEAD Box Protein 58DEAD-box RNA HelicasesReceptors, ImmunologicRIGI protein, human

Identifiers

PMID22776165
PMCPMC3733099
OpenAlexW2026550511

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.