Evidence map›Paper›PMID 22775452›Full record

ArticleJournal of the American Chemical Society2012

A fluorescence light-up Ag nanocluster probe that discriminates single-nucleotide variants by emission color.

Hsin-Chih Yeh, Jaswinder Sharma, Ie-Ming Shih, Dung M Vu, Jennifer S Martinez, James H Werner

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Interrupted DNA and Slow Silver Cluster Luminescence.The journal of physical chemistry. C, Nanomaterials and interfaces · 2023
    Article
  9. Massively Parallel Selection of NanoCluster Beacons.Advanced materials (Deerfield Beach, Fla.) · 2022
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Removal of the ARSC advances · 2020
    Article
  16. Article
  17. Article
  18. Research advances in the detection of miRNA.Journal of pharmaceutical analysis · 2019
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hsin-Chih YehCenter of Integrated Nanotechnologies, Los Alamos National Laboratory, Mail Stop K771, Los Alamos, New Mexico 87545, USA. tim.yeh@austin.utexas.edu
Jaswinder Sharma
Ie-Ming Shih
Dung M Vu
Jennifer S Martinez
James H Werner

Funding

Molecular Diagnostics for Malignant EffusionR01CA103937 · NCI · JOHNS HOPKINS UNIVERSITY · PI SHIH, IE-MING · 2004 to 2012
$2.7M
The Roles of HBXAP Gene in Ovarian CancerR01CA129080 · NCI · JOHNS HOPKINS UNIVERSITY · PI SHIH, IE-MING · 2008 to 2012
$1.7M
Tracking the 3-D intracellular spatial trajectory of an individual IgE moleculeR21AI077072 · NIAID · LOS ALAMOS NAT SECTY-LOS ALAMOS NAT LAB · PI WERNER, JAMES H · 2008 to 2009
$520k
NCI NIH HHS CA103937NCI NIH HHS CA129080NCI NIH HHS R01 CA103937NCI NIH HHS R01 CA129080NIAID NIH HHS R21 AI077072
6 · The paper itself

Abstract

Rapid and precise screening of small genetic variations, such as single-nucleotide polymorphisms (SNPs), among an individual's genome is still an unmet challenge at point-of-care settings. One crucial step toward this goal is the development of discrimination probes that require no enzymatic reaction and are easy to use. Here we report a new type of fluorescent molecular probe, termed a chameleon NanoCluster Beacon (cNCB), that lights up into different colors upon binding SNP targets. NanoCluster Beacons (NCBs) are collections of a small number of Ag atoms templated on single-stranded DNA that fluoresce strongly when placed in proximity to particular DNA sequences, termed enhancers. Here we show the fluorescence emission color of a NCB can change substantially (a shift of 60-70 nm in the emission maximum) depending upon the alignment between the silver nanocluster and the DNA enhancer sequence. Chameleon NCBs exploit this color shift to directly detect SNPs, based on the fact that different SNPs produce a different alignment between the Ag nanocluster and the enhancer. This SNP detection method has been validated on all single-nucleotide substitution scenarios in three synthetic DNA targets, in six disease-related SNP targets, and in two clinical samples taken from patients with ovarian serous borderline tumors. Samples with single-nucleotide variations can be easily identified by the naked eye under UV excitation, making this method a reliable and low-cost assay with a simple readout format.

Indexed as

FluorescenceNanostructuresPolymorphism, GeneticColorMolecular ProbesMolecular Probes

Identifiers

PMID22775452
PMCPMC3593641

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.