Evidence map›Paper›PMID 22773193›Full record

ArticleThe protein journal2012

Investigations of amino acids in the ATP binding site of 5,10-methenyltetrahydrofolate synthetase.

Meagan Tolley, Lydia Bickford, Kristen Clare, Timothy W Johann

Abstract read
PubMed Publisher
In one paragraph

Article in The protein journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Meagan TolleyRoanoke College, 221 College Lane, Salem, VA 24153, USA.
Lydia Bickford
Kristen Clare
Timothy W Johann
Roanoke College · USHarvard University · USNortheastern University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

5-Formyltetrahydrofolate is a compound that is administered as a rescue agent in methotrexate chemotherapy and in 5-fluorouracil chemotherapy for synergistic effects. It has also recently been suggested to play a role in bacterial resistance to antifolate therapy. 5,10-methenyltetrahydrofolate synthetase (MTHFS) is the only enzyme known to catalyze the conversion of this compound to 5,10-methenyltetrahydrofolate along with the hydrolysis of ATP to ADP. To better understand the roles of specific amino acids in the ATP binding pocket of this enzyme, we used site-directed mutagenesis to create 10 modified forms of the Mycoplasma pneumoniae ortholog. The Michaelis constant (K(m)) for each substrate and the turnover number (k(cat)) was determined for each mutant to help elucidate the role of individual amino acids. Data were compared to crystal structures of human and M. pneumoniae orthologs of MTHFS. Results were largely consistent with a simple coulombic and proximity model; the larger the predicted charges of an interaction and the closer those interactions were to the phosphate transferred between the substrates, the greater the reduction in ATP binding and catalytic activity of the enzyme.

Indexed as

Adenosine TriphosphateAmino AcidsAmino Acid SequenceAmino Acid SubstitutionBacterial ProteinsBinding SitesCarbon-Nitrogen LigasesConserved SequenceHydrogen BondingIntracellular Signaling Peptides and ProteinsKineticsModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedMycoplasma pneumoniaeStructural Homology, Protein5,10-methenyltetrahydrofolate synthetaseAdenosine TriphosphateAmino AcidsBacterial ProteinsCarbon-Nitrogen LigasesIntracellular Signaling Peptides and ProteinsWDFY2 protein, human

Identifiers

PMID22773193
OpenAlexW2079294266

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.