Evidence map›Paper›PMID 22772369›Full record

ArticleNature genetics2012

FAN1 mutations cause karyomegalic interstitial nephritis, linking chronic kidney failure to defective DNA damage repair.

Weibin Zhou, Edgar A Otto, Andrew Cluckey, Rannar Airik, Toby W Hurd, Moumita Chaki, Katrina Diaz, Francis P Lach, Geoffrey R Bennett, Heon Yung Gee and 34 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
15.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 238 citations in OpenAlex.

  1. Review
  2. Genetic kidney disease in adults-the pathologists' perspective.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2026
    Review
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  18. Phenotypic and Genotypic Features of theInternational journal of molecular sciences · 2024
    Article
  19. Posttranscriptional regulation ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Article

91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

44 authors at 20 institutions in 8 countries.

Weibin ZhouDepartment of Pediatrics, University of Michigan, Ann Arbor, Michigan, USA.
Edgar A Otto
Andrew Cluckey
Rannar Airik
Toby W Hurd
Moumita Chaki
Katrina Diaz
Francis P Lach
Geoffrey R Bennett
Heon Yung Gee
Amiya K Ghosh
Sivakumar Natarajan
Supawat Thongthip
Uma Veturi
Susan J Allen
Sabine Janssen
Gokul Ramaswami
Joanne Dixon
Felix Burkhalter
Martin Spoendlin
Holger Moch
Michael J Mihatsch
Jerome Verine
Richard Reade
Hany Soliman
Michel Godin
Denes Kiss
Guido Monga
Gianna Mazzucco
Kerstin Amann
Ferruh Artunc
Ronald C Newland
Thorsten Wiech
Stefan Zschiedrich
Tobias B Huber
Andreas Friedl
Gisela G Slaats
Jaap A Joles
Roel Goldschmeding
Joseph Washburn
Rachel H Giles
Shawn Levy
Agata Smogorzewska
Friedhelm Hildebrandt
University of Michigan · USRockefeller University · USUniversity Medical Center Utrecht · NLUniversity Hospital of Basel · CHUniversity Medical Center Freiburg · DEAssistance Publique – Hôpitaux de Paris · FRClinique du Pont Saint-Vaast · FRConcord Repatriation General Hospital · AUFriedrich-Alexander-Universität Erlangen-Nürnberg · DEHudsonAlpha Institute for Biotechnology · USKantonsspital Baselland · CHUniversità degli Studi del Piemonte Orientale “Amedeo Avogadro” · ITUniversität Hamburg · DEUniversité de Rouen Normandie · FRUniversité Paris Cité · FRUniversity Children's Hospital Tübingen · DEUniversity Hospital of Zurich · CHUniversity of Turin · ITUniversity of Wisconsin–Madison · USWellington Hospital · NZ

Funding

PUBLIC HEALTH DEMONSTRATIONP60DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MYERS, MARTIN G · 1985 to 2012
$26.5M
Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Scott Soleimanpour · 2013 to 2026
$24.3M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
Identifying all Meckel-like ciliopathy genes by established total exome capture aRC4DK090917 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OTTO, EDGAR A · 2010 to 2010
$1.2M
Mesonephric Model of Podocyte Injury and RegenerationR00DK091405 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ZHOU, WEIBIN · 2013 to 2015
$730k
Mesonephric Model of Podocyte Injury and RegenerationK99DK091405 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ZHOU, WEIBIN · 2011 to 2012
$178k
Howard Hughes Medical InstituteNIDDK NIH HHS DK020572NIDDK NIH HHS DK068306NIDDK NIH HHS DK090917NIDDK NIH HHS DK091405NIDDK NIH HHS K99 DK091405NIDDK NIH HHS P30 DK020572NIDDK NIH HHS P60 DK020572NIDDK NIH HHS R00 DK091405NIDDK NIH HHS R01 DK068306NIDDK NIH HHS RC4 DK090917
6 · The paper itself

Abstract

Chronic kidney disease (CKD) represents a major health burden. Its central feature of renal fibrosis is not well understood. By exome sequencing, we identified mutations in FAN1 as a cause of karyomegalic interstitial nephritis (KIN), a disorder that serves as a model for renal fibrosis. Renal histology in KIN is indistinguishable from that of nephronophthisis, except for the presence of karyomegaly. The FAN1 protein has nuclease activity and acts in DNA interstrand cross-link (ICL) repair within the Fanconi anemia DNA damage response (DDR) pathway. We show that cells from individuals with FAN1 mutations have sensitivity to the ICL-inducing agent mitomycin C but do not exhibit chromosome breakage or cell cycle arrest after diepoxybutane treatment, unlike cells from individuals with Fanconi anemia. We complemented ICL sensitivity with wild-type FAN1 but not with cDNA having mutations found in individuals with KIN. Depletion of fan1 in zebrafish caused increased DDR, apoptosis and kidney cysts. Our findings implicate susceptibility to environmental genotoxins and inadequate DNA repair as novel mechanisms contributing to renal fibrosis and CKD.

Indexed as

MutationAnimalsCell LineDNA DamageDNA RepairEndodeoxyribonucleasesExodeoxyribonucleasesFanconi Anemia Complementation Group D2 ProteinGene Knockdown TechniquesGenes, RecessiveGenetic Complementation TestHumansMultifunctional EnzymesNephritis, InterstitialRenal Insufficiency, ChronicZebrafishEndodeoxyribonucleasesExodeoxyribonucleasesFAN1 protein, humanFANCD2 protein, humanFanconi Anemia Complementation Group D2 ProteinMultifunctional Enzymes

Identifiers

PMID22772369
PMCPMC3412140
OpenAlexW1991069902

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.