Evidence map›Paper›PMID 22771615›Full record

ReviewSeminars in cancer biology2013

Genome organizing function of SATB1 in tumor progression.

Terumi Kohwi-Shigematsu, Krzysztof Poterlowicz, Ellen Ordinario, Hye-Jung Han, Vladimir A Botchkarev, Yoshinori Kohwi

Open access · bronzeAbstract readReview
In one paragraph

Review in Seminars in cancer biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 2 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 2 syntheses or guidelines pooled it, 118 citations in OpenAlex.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Terumi Kohwi-ShigematsuLife Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA 94720, USA. tkohwi-shigematsu@lbl.gov
Krzysztof Poterlowicz
Ellen Ordinario
Hye-Jung Han
Vladimir A Botchkarev
Yoshinori Kohwi
Lawrence Berkeley National Laboratory · USUniversity of Bradford · GB

Funding

Studies on gene regulation by chromatin organizationR37CA039681 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KOHWI-SHIGEMATSU, TERUMI · 2002 to 2015
$9.8M
Determinants for genome-wide epigenomics in metastatic breast cancerR01CA146444 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KOHWI-SHIGEMATSU, TERUMI · 2009 to 2013
$2.3M
STUDIES ON NON B DNA STRUCTURE WITH CHEMICAL CARCINOGENSR01CA039681 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KOHWI-SHIGEMATSU, TERUMI · 1985 to 2001
$1.0M
Genome Organization and Breast Cancer MetastasisF32CA138109 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI ORDINARIO, ELLEN · 2009 to 2011
$156k
Medical Research Council G0901666NCI NIH HHS F32 CA138109NCI NIH HHS F32CA138109NCI NIH HHS R01 CA039681NCI NIH HHS R01 CA146444NCI NIH HHS R01CA146444NCI NIH HHS R37 CA039681NCI NIH HHS R37CA039681
6 · The paper itself

Abstract

When cells change functions or activities (such as during differentiation, response to extracellular stimuli, or migration), gene expression undergoes large-scale reprogramming, in cell type- and function-specific manners. Large changes in gene regulation require changes in chromatin architecture, which involve recruitment of chromatin remodeling enzymes and epigenomic modification enzymes to specific genomic loci. Transcription factors must also be accurately assembled at these loci. SATB1 is a genome organizer protein that facilitates these processes, providing a nuclear architectural platform that anchors hundreds of genes, through its interaction with specific genomic sequences; this activity allows expression of all these genes to be regulated in parallel, and enables cells to thereby alter their function. We review and describe future perspectives on SATB1 function in higher-order chromatin structure and gene regulation, and its role in metastasis of breast cancer and other tumor types.

Indexed as

AnimalsBreast NeoplasmsChromatinChromatin Assembly and DisassemblyDisease ProgressionEpigenesis, GeneticFemaleGenome, HumanHumansMatrix Attachment Region Binding ProteinsModels, BiologicalNeoplasmsChromatinMatrix Attachment Region Binding ProteinsSATB1 protein, human

Identifiers

PMID22771615
PMCPMC4048061
OpenAlexW2013126388

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.