Evidence map›Paper›PMID 22771330›Full record

ArticleBiochemical and biophysical research communications2012

Intestinal Pdx1 mediates nutrient metabolism gene networks and maternal expression is essential for perinatal growth in mice.

Chin Chen, Tripp Leavitt, Eric Sibley

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chin ChenDivision of Pediatric Gastroenterology, Stanford University School of Medicine, Stanford, CA 94305-5208, USA.
Tripp Leavitt
Eric Sibley
Stanford University · US

Funding

Proteomics/GenomicsP30DK056339 · NIDDK · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2001 to 2010
$10.4M
Spatiotemporal Regulation of Intestinal Gene ExpressionR01DK060715 · NIDDK · STANFORD UNIVERSITY · PI SIBLEY, ERIC · 2003 to 2015
$3.8M
PDX-1 Regulation of Intestinal Pattern FormationR01DK072416 · NIDDK · STANFORD UNIVERSITY · PI SIBLEY, ERIC · 2007 to 2012
$1.7M
NIDDK NIH HHS DK56339NIDDK NIH HHS DK60715NIDDK NIH HHS DK72416NIDDK NIH HHS P30 DK056339NIDDK NIH HHS R01 DK060715NIDDK NIH HHS R01 DK072416
6 · The paper itself

Abstract

The homeodomain transcription factor Pdx1 is essential for pancreas formation and functions in pancreatic islets cells to regulate genes involved in maintenance of glucose homeostasis. In order to investigate a role for Pdx1 in intestinal cells, we analyzed the functions and networks associated with genes differentially expressed by Pdx1 overexpression in human Caco-2 cells. In agreement with previous results for intestine isolated from mice with Pdx1 inactivation, functional analysis of genes differentially expressed with Pdx1 overexpression revealed functions significantly associated with nutrient metabolism. Similarly, network analysis examining the interactions among the differentially expressed genes revealed gene networks involved in lipid metabolism. Consistent with defects in maternal nutrient metabolism, mouse pups born to dams with intestine-specific Pdx1 inactivation are underweight and fail to thrive in the neonatal period compared to pups born to control dams. We conclude that Pdx1 mediates lipid metabolism gene networks in intestinal cells and that maternal expression is essential for perinatal growth in mice.

Indexed as

Gene Expression RegulationGene Regulatory NetworksAnimalsCaco-2 CellsFemaleFetal WeightHomeodomain ProteinsHumansIntestinal MucosaIntestinesLipid MetabolismMaternal-Fetal ExchangeMaternal Nutritional Physiological PhenomenaMiceOligonucleotide Array Sequence AnalysisPregnancyHomeodomain Proteinspancreatic and duodenal homeobox 1 proteinTrans-Activators

Identifiers

PMID22771330
PMCPMC3412912
OpenAlexW2014487010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.