Evidence map›Paper›PMID 22771214›Full record

ArticleStructure (London, England : 1993)2012

Mechanism of Cd2+ coordination during slow inactivation in potassium channels.

H Raghuraman, Julio F Cordero-Morales, Vishwanath Jogini, Albert C Pan, Astrid Kollewe, Benoît Roux, Eduardo Perozo

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Biochemical and biophysical characterization of a prokaryotic MgProtein expression and purification · 2019
    Article
  8. Article
  9. Prying open a glutamate receptor gate.The Journal of general physiology · 2019
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Dynamics transitions at the outer vestibule of the KcsA potassium channel during gating.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  16. Article
  17. Article
  18. Inactivation in the potassium channel KcsA.Journal of structural biology: X
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

H RaghuramanDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA.
Julio F Cordero-Morales
Vishwanath Jogini
Albert C Pan
Astrid Kollewe
Benoît Roux
Eduardo Perozo
University of Illinois Chicago · USD. E. Shaw Research · USUniversity of California, San Francisco · USUniversity of Freiburg · DE

Funding

Subproject 5U54GM074946 · NIGMS · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI TERWILLIGER, THOMAS C. · 2005 to 2009
$20.2M
Computational Studies of Ion Channels - Resubmission 01R01GM062342 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI ROUX, BENOIT · 2001 to 2022
$8.7M
HIGH RESOLUTION STRUCTURAL DYNAMICS OF K CHANNELSR01GM057846 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI PEROZO, EDUARDO A · 1998 to 2018
$7.4M
Structural basis for transmembrane Mg2+ transportR01GM088406 · NIGMS · UNIVERSITY OF CHICAGO · PI PEROZO, EDUARDO A · 2009 to 2012
$1.3M
NIGMS NIH HHS R01 GM057846NIGMS NIH HHS R01 GM062342NIGMS NIH HHS R01 GM088406NIGMS NIH HHS R01-GM57846NIGMS NIH HHS U54 GM074946NIGMS NIH HHS U54 GM74946
6 · The paper itself

Abstract

In K+ channels, rearrangements of the pore outer vestibule have been associated with C-type inactivation gating. Paradoxically, the crystal structure of Open/C-type inactivated KcsA suggests these movements to be modest in magnitude. In this study, we show that under physiological conditions, the KcsA outer vestibule undergoes relatively large dynamic rearrangements upon inactivation. External Cd2+ enhances the rate of C-type inactivation in an cysteine mutant (Y82C) via metal-bridge formation. This effect is not present in a non-inactivating mutant (E71A/Y82C). Tandem dimer and tandem tetramer constructs of equivalent cysteine mutants in KcsA and Shaker K+ channels demonstrate that these Cd2+ metal bridges are formed only between adjacent subunits. This is well supported by molecular dynamics simulations. Based on the crystal structure of Cd2+ -bound Y82C-KcsA in the closed state, together with electron paramagnetic resonance distance measurements in the KcsA outer vestibule, we suggest that subunits must dynamically come in close proximity as the channels undergo inactivation.

Indexed as

Amino Acid MotifsAmino Acid SubstitutionBacterial ProteinsCadmiumCoordination ComplexesCrystallography, X-RayElectron Spin Resonance SpectroscopyLiposomesMolecular Dynamics SimulationPotassium ChannelsProtein StabilityProtein Structure, QuaternaryProtein SubunitsStreptomyces lividansThermodynamicsBacterial ProteinsCadmiumCoordination ComplexesLiposomesPotassium Channelsprokaryotic potassium channelProtein Subunits

Identifiers

PMID22771214
PMCPMC3846092
OpenAlexW2031187957

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.