Evidence map›Paper›PMID 22768368›Full record

ArticleStandards in genomic sciences2012

Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains.

Shivakumara Siddaramappa, Jean F Challacombe, Susana F Delano, Lance D Green, Hajnalka Daligault, David Bruce, Chris Detter, Roxanne Tapia, Shunsheng Han, Lynne Goodwin and 16 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Comparative genomics revealsApplied and environmental microbiology · 2026
    Article
  3. Revisiting the dihaloelimination potential ofApplied and environmental microbiology · 2026
    Article
  4. Article
  5. Article
  6. Article
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  9. Article
  10. Article
  11. Isotopic effects of PCE induced by organohalide-respiring bacteria.Environmental science and pollution research international · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Shivakumara Siddaramappa
Jean F Challacombe
Susana F Delano
Lance D Green
Hajnalka Daligault
David Bruce
Chris Detter
Roxanne Tapia
Shunsheng Han
Lynne Goodwin
James Han
Tanja Woyke
Sam Pitluck
Len Pennacchio
Matt Nolan
Miriam Land
Yun-Juan Chang
Nikos C Kyrpides
Galina Ovchinnikova
Loren Hauser
Alla Lapidus
Jun Yan
Kimberly S Bowman
Milton S da Costa
Fred A Rainey
William M Moe

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium was first isolated from chlorinated solvent contaminated groundwater at a Superfund site located near Baton Rouge, Louisiana, USA. D. lykanthroporepellens was of interest for genome sequencing for two reasons: (a) an unusual ability to couple growth with reductive dechlorination of environmentally important polychlorinated aliphatic alkanes and (b) a phylogenetic position that is distant from previously sequenced bacteria. The 1,686,510 bp circular chromosome of strain BL-DC-9(T) contains 1,720 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small subunit rRNA (16S) locus.

Indexed as

Chloroflexicontaminationgroundwaterhydrogen utilizationreductive dechlorinationstrictly anaerobic

Identifiers

PMID22768368
PMCPMC3387798

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.