Evidence map›Paper›PMID 22768367›Full record

ArticleStandards in genomic sciences2012

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

Alex Copeland, Ahmet Zeytun, Montri Yassawong, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Cliff Han, Roxanne Tapia and 27 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Microorganisms · 2023
    Article
  3. Article
  4. Article
  5. Thiol Reductases inAntioxidants (Basel, Switzerland) · 2022
    Review
  6. Structural features and functional implications of proteins enabling the robustness ofComputational and structural biotechnology journal · 2020
    Review
  7. Review
  8. Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 9 institutions in 4 countries.

Alex Copeland
Ahmet Zeytun
Montri Yassawong
Matt Nolan
Susan Lucas
Nancy Hammon
Shweta Deshpande
Jan-Fang Cheng
Cliff Han
Roxanne Tapia
Lynne A Goodwin
Sam Pitluck
Konstantinos Mavromatis
Konstantinos Liolios
Ioanna Pagani
Natalia Ivanova
Natalia Mikhailova
Amrita Pati
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Cynthia D Jeffries
Evelyne-Marie Brambilla
Manfred Rohde
Johannes Sikorski
Rüdiger Pukall
Markus Göker
John C Detter
Tanja Woyke
James Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C Kyrpides
Hans-Peter Klenk
Alla Lapidus
Joint Genome Institute · USLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DELos Alamos National Laboratory · USLawrence Berkeley National Laboratory · USOak Ridge National Laboratory · USHelmholtz Centre for Infection Research · DEMahidol University · THUniversity of California, Davis · USUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deinococcus proteolyticus (ex Kobatake et al. 1973) Brook and Murray 1981 is one of currently 47 species in the genus Deinococcus within the family Deinococcaceae. Strain MRP(T) was isolated from feces of Lama glama and possesses extreme radiation resistance, a trait is shares with various other species of the genus Deinococcus, with D. proteolyticus being resistant up to 1.5 Mrad of gamma radiation. Strain MRP(T) is of further interest for its carotenoid pigment. The genome presented here is only the fifth completed genome sequence of a member of the genus Deinococcus (and the forth type strain) to be published, and will hopefully contribute to a better understanding of how members of this genus adapted to high gamma- or UV ionizing-radiation. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,886,836 bp long genome with its four large plasmids of lengths 97 kbp, 132 kbp, 196 kbp and 315 kbp harbors 2,741 protein-coding and 58 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

carotenoid pigmentschemoorganotrophicDeinococcaceaeGEBAGram-positivemesophilenon-motileproteolyticradioresistantstrictly aerobictetrad-forming cocci

Identifiers

PMID22768367
PMCPMC3387796
OpenAlexW2160437288

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.