Evidence map›Paper›PMID 22768366›Full record

ArticleStandards in genomic sciences2012

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)).

Markus Göker, Elisabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Cliff Han, Roxanne Tapia and 24 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Markus Göker
Elisabeth Saunders
Alla Lapidus
Matt Nolan
Susan Lucas
Nancy Hammon
Shweta Deshpande
Jan-Fang Cheng
Cliff Han
Roxanne Tapia
Lynne A Goodwin
Sam Pitluck
Konstantinos Liolios
Konstantinos Mavromatis
Ioanna Pagani
Natalia Ivanova
Natalia Mikhailova
Amrita Pati
Amy Chen
Krishna Palaniappan
Miriam Land
Yun-Juan Chang
Cynthia D Jeffries
Evelyne-Marie Brambilla
Manfred Rohde
Stefan Spring
John C Detter
Tanja Woyke
James Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C Kyrpides
Hans-Peter Klenk

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermovirga lienii Dahle and Birkeland 2006 is a member of the genus Thermovirga in the genomically moderately well characterized phylum 'Synergistetes'. Members of this relatively recently proposed phylum 'Synergistetes' are of interest because of their isolated phylogenetic position and their diverse habitats, e.g. from humans to oil wells. The genome of T. lienii Cas60314(T) is the fifth genome sequence (third completed) from this phylum to be published. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,999,646 bp long genome (including one plasmid) with its 1,914 protein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

anaerobicchemoorganotrophicGEBAGram-negativemarine oil wellmotileSynergistaceaethermophilic

Identifiers

PMID22768366
PMCPMC3387794

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.