Evidence map›Paper›PMID 22768081›Full record

ArticlePloS one2012

Small molecules targeted to a non-catalytic "RVxF" binding site of protein phosphatase-1 inhibit HIV-1.

Tatiana Ammosova, Maxim Platonov, Venkat R K Yedavalli, Yuri Obukhov, Victor R Gordeuk, Kuan-Teh Jeang, Dmytro Kovalskyy, Sergei Nekhai

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Tatiana AmmosovaCenter for Sickle Cell Disease, Howard University, Washington, DC, United States of America.
Maxim Platonov
Venkat R K Yedavalli
Yuri Obukhov
Victor R Gordeuk
Kuan-Teh Jeang
Dmytro Kovalskyy
Sergei Nekhai
Howard University · USInstitute of Molecular Biology and Genetics · UANational Institute of Allergy and Infectious Diseases · USNational Institutes of Health · USTaras Shevchenko National University of Kyiv · UA

Funding

STRUCTURAL/FUNCTIONAL CHARACTERIZATION OF AMINOGLYCOSIDEG12RR003048 · NCRR · HOWARD UNIVERSITY · PI SOUTHERLAND, WILLIAM M. · 1985 to 2011
$19.0M
UVDM01RR010284 · NCRR · HOWARD UNIVERSITY · PI TAYLOR, WILLIAM ROBERT · 1996 to 2010
$17.4M
Molecular Mechanisms Of Human Immunodeficiency Virus Trans-regulatory ProteinsZIAAI000547 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI JEANG, KUAN-TEH · 2009 to 2013
$5.9M
Howard University Research Scientist AwardR25HL003679 · NHLBI · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2005 to 2009
$1.7M
Regulation of HIV-1 Transcription by CDK2SC1GM082325 · NIGMS · HOWARD UNIVERSITY · PI NEKHAI, SERGEI · 2008 to 2011
$1.2M
Mass spectrometry of proteome, phosphoproteome and phosphatase-targeted drug desiK25GM097501 · NIGMS · HOWARD UNIVERSITY · PI OBUKHOV, YURI · 2012 to 2012
$148k
NCRR NIH HHS 2G12RR003048NCRR NIH HHS 2M01 RR10284NCRR NIH HHS G12 RR003048NCRR NIH HHS M01 RR010284NHLBI NIH HHS 2 R25 HL003679-08NHLBI NIH HHS R25 HL003679NIGMS NIH HHS 1SC1GM082325-01NIGMS NIH HHS K25 GM097501NIGMS NIH HHS K25GM097501NIGMS NIH HHS SC1 GM082325
6 · The paper itself

Abstract

HIV-1 Tat protein recruits host cell factors including CDK9/cyclin T1 to HIV-1 TAR RNA and thereby induces HIV-1 transcription. An interaction with host Ser/Thr protein phosphatase-1 (PP1) is critical for this function of Tat. PP1 binds to a Tat sequence, Q(35)VCF(38), which resembles the PP1-binding "RVxF" motif present on PP1-binding regulatory subunits. We showed that expression of PP1 binding peptide, a central domain of Nuclear Inhibitor of PP1, disrupted the interaction of HIV-1 Tat with PP1 and inhibited HIV-1 transcription and replication. Here, we report small molecule compounds that target the "RVxF"-binding cavity of PP1 to disrupt the interaction of PP1 with Tat and inhibit HIV-1 replication. Using the crystal structure of PP1, we virtually screened 300,000 compounds and identified 262 small molecules that were predicted to bind the "RVxF"-accommodating cavity of PP1. These compounds were then assayed for inhibition of HIV-1 transcription in CEM T cells. One of the compounds, 1H4, inhibited HIV-1 transcription and replication at non-cytotoxic concentrations. 1H4 prevented PP1-mediated dephosphorylation of a substrate peptide containing an RVxF sequence in vitro. 1H4 also disrupted the association of PP1 with Tat in cultured cells without having an effect on the interaction of PP1 with the cellular regulators, NIPP1 and PNUTS, or on the cellular proteome. Finally, 1H4 prevented the translocation of PP1 to the nucleus. Taken together, our study shows that HIV- inhibition can be achieved through using small molecules to target a non-catalytic site of PP1. This proof-of-principle study can serve as a starting point for the development of novel antiviral drugs that target the interface of HIV-1 viral proteins with their host partners.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnti-HIV AgentsBinding SitesBiocatalysisCell NucleusCells, CulturedDNA-Binding ProteinsHIV-1HumansHydrophobic and Hydrophilic InteractionsIntracellular Signaling Peptides and ProteinsIntracellular SpaceModels, MolecularMolecular Sequence DataNuclear ProteinsAnti-HIV AgentsDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsPeptidesPPP1R10 protein, humanProtein Phosphatase 1protein phosphatase inhibitor-1RNA-Binding ProteinsSmall Molecule Librariestat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID22768081
PMCPMC3387161
OpenAlexW2067482468

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.