Evidence map›Paper›PMID 22767593›Full record

ArticleThe Journal of biological chemistry2012

Deconjugation of Nedd8 from Cul1 is directly regulated by Skp1-F-box and substrate, and the COP9 signalosome inhibits deneddylated SCF by a noncatalytic mechanism.

Ethan D Emberley, Ruzbeh Mosadeghi, Raymond J Deshaies

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Protein neddylation and its role in health and diseases.Signal transduction and targeted therapy · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Adaptive exchange sustains cullin-RING ubiquitin ligase networks and proper licensing of DNA replication.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Review
  19. Article
  20. The CRL4The EMBO journal · 2021
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ethan D EmberleyDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Ruzbeh Mosadeghi
Raymond J Deshaies
California Institute of Technology · US

Funding

Regulation of cullin - RING ubiquitin ligasesR01GM065997 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI DESHAIES, RAYMOND J · 2002 to 2018
$4.5M
Role of CSN in the activity and dynamic cycling of cullin-RING ubiquitin ligasesR01CA164803 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI COHEN, SETH M, DESHAIES, RAYMOND J · 2013 to 2017
$1.6M
CIHRHoward Hughes Medical InstituteNCI NIH HHS R01 CA164803NIGMS NIH HHS GM065997NIGMS NIH HHS R01 GM065997
6 · The paper itself

Abstract

COP9 signalosome (CSN) mediates deconjugation of the ubiquitin-like protein Nedd8 from the cullin subunits of SCF and other cullin-RING ubiquitin ligases (CRLs). This process is essential to maintain the proper activity of CRLs in cells. Here, we report a detailed kinetic characterization of CSN-mediated deconjugation of Nedd8 from SCF. CSN is an efficient enzyme, with a k(cat) of ~1 s(-1) and K(m) for neddylated Cul1-Rbx1 of ~200 nm, yielding a k(cat)/K(m) near the anticipated diffusion-controlled limit. Assembly with an F-box-Skp1 complex markedly inhibited deneddylation, although the magnitude varied considerably, with Fbw7-Skp1 inhibiting by ~5-fold but Skp2-Cks1-Skp1 by only ~15%. Deneddylation of both SCF(Fbw7) and SCF(Skp2-Cks1) was further inhibited ~2.5-fold by the addition of substrate. Combined, the inhibition by Fbw7-Skp1 plus its substrate cyclin E was greater than 10-fold. Unexpectedly, our results also uncover significant product inhibition by deconjugated Cul1, which results from the ability of Cul1 to bind tightly to CSN. Reciprocally, CSN inhibits the ubiquitin ligase activity of deneddylated Cul1. We propose a model in which assembled CRL complexes engaged with substrate are normally refractory to deneddylation. Upon consumption of substrate and subsequent deneddylation, CSN can remain stably bound to the CRL and hold it in low state of reduced activity.

Indexed as

Cell Cycle ProteinsCell Line, TumorCOP9 Signalosome ComplexCullin ProteinsCyclin EF-Box ProteinsF-Box-WD Repeat-Containing Protein 7HumansMultiprotein ComplexesNEDD8 ProteinOncogene ProteinsPeptide HydrolasesS-Phase Kinase-Associated ProteinsUbiquitin-Protein LigasesUbiquitinsCCNE1 protein, humanCell Cycle ProteinsCOP9 Signalosome ComplexCullin 1Cullin ProteinsCyclin EF-Box ProteinsF-Box-WD Repeat-Containing Protein 7FBXW7 protein, humanMultiprotein ComplexesNEDD8 ProteinNEDD8 protein, humanOncogene ProteinsPeptide HydrolasesSKP1 protein, humanS-Phase Kinase-Associated ProteinsUbiquitin-Protein LigasesUbiquitins

Identifiers

PMID22767593
PMCPMC3436198
OpenAlexW2086955443

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.