Evidence map›Paper›PMID 22767488›Full record

ArticleIntegrative and comparative biology2012

Coral comparative genomics reveal expanded Hox cluster in the cnidarian-bilaterian ancestor.

Timothy Q DuBuc, Joseph F Ryan, Chuya Shinzato, Nori Satoh, Mark Q Martindale

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Integrative and comparative biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  3. The genome of the colonial hydroidGenome research · 2024
    Article
  4. The genome of the deep-sea anemoneProceedings. Biological sciences · 2023
    Article
  5. Article
  6. Article
  7. Seeking Sense in the Hox Gene Cluster.Journal of developmental biology · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. The genome of Aiptasia, a sea anemone model for coral symbiosis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Timothy Q DuBucKewalo Marine Laboratory, University of Hawaii, Honolulu, HI 96813, USA.
Joseph F Ryan
Chuya Shinzato
Nori Satoh
Mark Q Martindale
Okinawa Institute of Science and Technology Graduate University · JPUniversity of Bergen · NOUniversity of Hawaii System · US

Funding

Gene regulatory network evolution and the origin of biological noveltiesR01GM093116 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI MARTINDALE, MARK Q · 2010 to 2013
$1.1M
NIGMS NIH HHS R01 GM093116
6 · The paper itself

Abstract

The key developmental role of the Hox cluster of genes was established prior to the last common ancestor of protostomes and deuterostomes and the subsequent evolution of this cluster has played a major role in the morphological diversity exhibited in extant bilaterians. Despite 20 years of research into cnidarian Hox genes, the nature of the cnidarian-bilaterian ancestral Hox cluster remains unclear. In an attempt to further elucidate this critical phylogenetic node, we have characterized the Hox cluster of the recently sequenced Acropora digitifera genome. The A. digitifera genome contains two anterior Hox genes (PG1 and PG2) linked to an Eve homeobox gene and an Anthox1A gene, which is thought to be either a posterior or posterior/central Hox gene. These data show that the Hox cluster of the cnidarian-bilaterian ancestor was more extensive than previously thought. The results are congruent with the existence of an ancient set of constraints on the Hox cluster and reinforce the importance of incorporating a wide range of animal species to reconstruct critical ancestral nodes.

Indexed as

Evolution, MolecularGenes, HomeoboxAmino Acid SequenceAnimalsAnthozoaCnidariaGenomeHomeodomain ProteinsInvertebratesPhylogenySequence AlignmentHomeodomain Proteins

Identifiers

PMID22767488
PMCPMC4817585
OpenAlexW2125564792

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.