Evidence map›Paper›PMID 22763339›Full record

ArticleScience signaling2012

Perinuclear mitochondrial clustering creates an oxidant-rich nuclear domain required for hypoxia-induced transcription.

Abu-Bakr Al-Mehdi, Viktor M Pastukh, Brad M Swiger, Darla J Reed, Mita R Patel, Gina C Bardwell, Viktoriya V Pastukh, Mikhail F Alexeyev, Mark N Gillespie

Abstract read
In one paragraph

Article in Science signaling, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 240 papers.

0numbers the graph read from it
0cells of the map it votes in
240citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

240 citing papers in PubMed, 373 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. ATL2 Recruits TRAK1 to Promote Mitochondrial Transport at ER-Mitochondria Contact Sites.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
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  12. Review
  13. Article
  14. Article
  15. Navigating the conjugated metabolome.bioRxiv : the preprint server for biology · 2026
    Article
  16. Article
  17. Cystinosis and Cellular Energy Failure: Mitochondria at the Crossroads.International journal of molecular sciences · 2026
    Review
  18. Article
  19. Review
  20. Review

180 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Abu-Bakr Al-MehdiDepartment of Pharmacology, College of Medicine, University of South Alabama, Mobile, AL 36688, USA.
Viktor M Pastukh
Brad M Swiger
Darla J Reed
Mita R Patel
Gina C Bardwell
Viktoriya V Pastukh
Mikhail F Alexeyev
Mark N Gillespie
University of South Alabama · US

Funding

T-type Calcium Channels and von Willebrand Factor ReleaseP01HL066299 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI ALVAREZ, DIEGO F. · 2001 to 2022
$34.6M
DNA LESIONS AND GENE EXPRESSION IN HYPOXIC LUNG DISEASER01HL058234 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI GILLESPIE, MARK N · 1998 to 2018
$5.2M
MtDNA repair: An isolated pharmacologic target in acute lung injuryR01HL113614 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI GILLESPIE, MARK N · 2012 to 2021
$3.5M
Mouse models for mitochondrial disorders caused by mutations in mtDNAR01OD010944 · OD · UNIVERSITY OF SOUTH ALABAMA · PI ALEXEYEV, MIKHAIL F., WALLACE, DOUGLAS C · 2012 to 2020
$2.6M
Lung Cell Genomic Threats from Physiological SignalsR01HL073244 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI GILLESPIE, MARK N · 2005 to 2009
$1.8M
Mouse models for mitochondrial disorders caused by mtDNA mutationsR01RR031286 · NCRR · UNIVERSITY OF SOUTH ALABAMA · PI ALEXEYEV, MIKHAIL F. · 2010 to 2011
$721k
NCRR NIH HHS R01 RR031286NHLBI NIH HHS P01 HL066299NHLBI NIH HHS P01HL66299NHLBI NIH HHS R01 HL058234NHLBI NIH HHS R01 HL073244NHLBI NIH HHS R01HL073244NHLBI NIH HHS R01 HL113614NHLBI NIH HHS R01HL113614NHLBI NIH HHS R01HL58234NIH HHS 8R01OD010944-03NIH HHS R01 OD010944
6 · The paper itself

Abstract

Mitochondria can govern local concentrations of second messengers, such as reactive oxygen species (ROS), and mitochondrial translocation to discrete subcellular regions may contribute to this signaling function. Here, we report that exposure of pulmonary artery endothelial cells to hypoxia triggered a retrograde mitochondrial movement that required microtubules and the microtubule motor protein dynein and resulted in the perinuclear clustering of mitochondria. This subcellular redistribution of mitochondria was accompanied by the accumulation of ROS in the nucleus, which was attenuated by suppressing perinuclear clustering of mitochondria with nocodazole to destabilize microtubules or with small interfering RNA-mediated knockdown of dynein. Although suppression of perinuclear mitochondrial clustering did not affect the hypoxia-induced increase in the nuclear abundance of hypoxia-inducible factor 1α (HIF-1α) or the binding of HIF-1α to an oligonucleotide corresponding to a hypoxia response element (HRE), it eliminated oxidative modifications of the VEGF (vascular endothelial growth factor) promoter. Furthermore, suppression of perinuclear mitochondrial clustering reduced HIF-1α binding to the VEGF promoter and decreased VEGF mRNA accumulation. These findings support a model for hypoxia-induced transcriptional regulation in which perinuclear mitochondrial clustering results in ROS accumulation in the nucleus and causes oxidative base modifications in the VEGF HRE that are important for transcriptional complex assembly and VEGF mRNA expression.

Indexed as

Cell HypoxiaTranscription, GeneticCell NucleusDNAHypoxia-Inducible Factor 1, alpha SubunitMitochondriaOxidantsReactive Oxygen SpeciesRNA, MessengerVascular Endothelial Growth Factor ADNAHIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitOxidantsReactive Oxygen SpeciesRNA, MessengerVascular Endothelial Growth Factor A

Identifiers

PMID22763339
PMCPMC3565837
OpenAlexW2123603473

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.