Evidence map›Paper›PMID 22763110›Full record

ArticleLancet (London, England)2012

Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.

arcOGEN Consortium, arcOGEN Collaborators, Eleftheria Zeggini, Kalliope Panoutsopoulou, Lorraine Southam, Nigel W Rayner, Aaron G Day-Williams, Margarida C Lopes, Vesna Boraska, Tonu Esko and 68 more

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in Lancet (London, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 213 papers, 27 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
213citing papers in PubMed, 27 pooled it
33.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

213 citing papers in PubMed, 27 syntheses or guidelines pooled it, 419 citations in OpenAlex.

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  8. Identification of Novel Loci Associated With Hip Shape: A Meta-Analysis of Genomewide Association Studies.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2019
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153 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

78 authors at 10 institutions in 3 countries.

arcOGEN ConsortiumWellcome Trust Sanger Institute, Morgan Building, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, UK. eleftheria@sanger.ac.uk
arcOGEN Collaborators
Eleftheria Zeggini
Kalliope Panoutsopoulou
Lorraine Southam
Nigel W Rayner
Aaron G Day-Williams
Margarida C Lopes
Vesna Boraska
Tonu Esko
Evangelos Evangelou
Albert Hoffman
Jeanine J Houwing-Duistermaat
Thorvaldur Ingvarsson
Ingileif Jonsdottir
Helgi Jonnson
Hanneke J Kerkhof
Margreet Kloppenburg
Steffan D Bos
Massimo Mangino
Sarah Metrustry
P Eline Slagboom
Gudmar Thorleifsson
Emma V A Raine
Madhushika Ratnayake
Michelle Ricketts
Claude Beazley
Hannah Blackburn
Suzannah Bumpstead
Katherine S Elliott
Sarah E Hunt
Simon C Potter
So-Youn Shin
Vijay K Yadav
Guangju Zhai
Kate Sherburn
Kate Dixon
Elizabeth Arden
Nadim Aslam
Phillippa-kate Battley
Ian Carluke
Sally Doherty
Andrew Gordon
John Joseph
Richard Keen
Nicola C Koller
Sheryl Mitchell
Fiona O'Neill
Ellen Paling
Mike R Reed
Fernando Rivadeneira
Diane Swift
Kirsten Walker
Bridget Watkins
Maggie Wheeler
Fraser Birrell
John P A Ioannidis
Ingrid Meulenbelt
Andres Metspalu
Ashok Rai
Donald Salter
Kari Stefansson
Unnur Stykarsdottir
André G Uitterlinden
Joyce B J van Meurs
Kay Chapman
Panos Deloukas
William E R Ollier
Gillian A Wallis
Nigel Arden
Andrew Carr
Michael Doherty
Andrew McCaskie
J Mark Willkinson
Stuart H Ralston
Ana M Valdes
Tim D Spector
John Loughlin
King's College London · GBWellcome Trust · GBUniversity of Edinburgh · GBNewcastle University · GBUniversity of Iceland · ISUniversity of Nottingham · GBdeCODE Genetics (Iceland) · ISErasmus University Rotterdam · NLUniversity of Sheffield · GBWellcome Sanger Institute · GB

Funding

Arthritis Research UK 18030Medical Research Council G0100594Medical Research Council G0600237Medical Research Council G0900753Medical Research Council G0901461Medical Research Council MC_U122886349Wellcome Trust
6 · The paper itself

Abstract

backgroundOsteoarthritis is the most common form of arthritis worldwide and is a major cause of pain and disability in elderly people. The health economic burden of osteoarthritis is increasing commensurate with obesity prevalence and longevity. Osteoarthritis has a strong genetic component but the success of previous genetic studies has been restricted due to insufficient sample sizes and phenotype heterogeneity.

methodsWe undertook a large genome-wide association study (GWAS) in 7410 unrelated and retrospectively and prospectively selected patients with severe osteoarthritis in the arcOGEN study, 80% of whom had undergone total joint replacement, and 11,009 unrelated controls from the UK. We replicated the most promising signals in an independent set of up to 7473 cases and 42,938 controls, from studies in Iceland, Estonia, the Netherlands, and the UK. All patients and controls were of European descent.

findingsWe identified five genome-wide significant loci (binomial test p≤5·0×10(-8)) for association with osteoarthritis and three loci just below this threshold. The strongest association was on chromosome 3 with rs6976 (odds ratio 1·12 [95% CI 1·08-1·16]; p=7·24×10(-11)), which is in perfect linkage disequilibrium with rs11177. This SNP encodes a missense polymorphism within the nucleostemin-encoding gene GNL3. Levels of nucleostemin were raised in chondrocytes from patients with osteoarthritis in functional studies. Other significant loci were on chromosome 9 close to ASTN2, chromosome 6 between FILIP1 and SENP6, chromosome 12 close to KLHDC5 and PTHLH, and in another region of chromosome 12 close to CHST11. One of the signals close to genome-wide significance was within the FTO gene, which is involved in regulation of bodyweight-a strong risk factor for osteoarthritis. All risk variants were common in frequency and exerted small effects.

interpretationOur findings provide insight into the genetics of arthritis and identify new pathways that might be amenable to future therapeutic intervention.

fundingarcOGEN was funded by a special purpose grant from Arthritis Research UK.

Indexed as

Arthroplasty, ReplacementCase-Control StudiesFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansLinkage DisequilibriumMaleOsteoarthritisOsteoarthritis, HipOsteoarthritis, KneePolymorphism, Single Nucleotide

Identifiers

PMID22763110
PMCPMC3443899
OpenAlexW2140609232

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.