Evidence map›Paper›PMID 22761441›Full record

ArticleThe Journal of biological chemistry2012

Structural requirements for recognition of major histocompatibility complex class II by membrane-associated RING-CH (MARCH) protein E3 ligases.

Martin Jahnke, John Trowsdale, Adrian P Kelly

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  5. Review
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  10. Review
  11. Ubiquitin-dependent sorting in endocytosis.Cold Spring Harbor perspectives in biology · 2014
    Review
  12. Article
  13. Review
  14. Review
  15. Ubiquitination of HLA-DO by MARCH family E3 ligases.European journal of immunology · 2013
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Martin JahnkeDivision of Immunology, Department of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom.
John Trowsdale
Adrian P Kelly
University of Cambridge · GB

Funding

Medical Research Council G0901682Medical Research Council G9800943Wellcome Trust
6 · The paper itself

Abstract

MARCH E3 ligases play a key role in controlling MHC class II surface expression by regulated ubiquitination of a lysine residue in the β-chain. Little is known concerning how these enzymes target their specific substrates. Here we show that recognition of HLA-DR by MARCH proteins is complex. Several features associated with the transmembrane domain and bordering regions influence the overall efficiency of receptor internalization. A cluster of residues at the interface of the lipid bilayer and the cytosol plays the most important role in MARCH8 recognition of HLA-DRβ. Variation in this sequence also determines specificity of MARCH9 for HLA-DQ. Residues located in helical face four of HLA-DRβ together with a charged residue at the boundary with the stalk region also contribute significantly to recognition. Truncation analysis suggested that a dileucine-like motif in the DRβ cytoplasmic tail influences the efficiency of co-localization of HLA-DR with MARCH8. The DRβ-encoded acceptor lysine functioned optimally when placed in its natural location relative to the bilayer. In the DRα/DRβ dimer most other amino acids in the cytoplasmic tail could be substituted for alanine with minimal influence on function. Our data support a model whereby multiple features of HLA-DR are involved in substrate recognition by MARCH8. The single most important region is located at the interface between the transmembrane domain and the cytosol. Variation in sequence in this location between different class II isotypes controls efficiency of recognition by different MARCH E3 ligases.

Indexed as

Amino Acid MotifsAnimalsGene Expression RegulationHEK293 CellsHLA-DQ AntigensHLA-DR alpha-ChainsHLA-DR beta-ChainsHumansMembrane ProteinsMiceProtein Structure, TertiaryUbiquitin-Protein LigasesHLA-DQ AntigensHLA-DR alpha-ChainsHLA-DR beta-ChainsMARCHF8 protein, humanMARCHF9 protein, humanMembrane ProteinsUbiquitin-Protein Ligases

Identifiers

PMID22761441
PMCPMC3436574
OpenAlexW1984731860

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.