Evidence map›Paper›PMID 22761376›Full record

ArticleJournal of virology2012

Rotavirus VP8*: phylogeny, host range, and interaction with histo-blood group antigens.

Yang Liu, Pengwei Huang, Ming Tan, Yiliu Liu, Jacek Biesiada, Jarek Meller, Alejandro A Castello, Baoming Jiang, Xi Jiang

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed, 1 pooled it
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 1 synthesis or guideline pooled it, 185 citations in OpenAlex.

  1. Host Genetic Susceptibility to Enteric Viruses: A Systematic Review and Metaanalysis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2016
    Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Yang LiuDivision of Infectious Diseases, University of Cincinnati College of Medicine, Cincinnati, Ohio, USA.
Pengwei Huang
Ming Tan
Yiliu Liu
Jacek Biesiada
Jarek Meller
Alejandro A Castello
Baoming Jiang
Xi Jiang
Cincinnati Children's Hospital Medical Center · USUniversity of Cincinnati Medical Center · USCenters for Disease Control and Prevention · USCincinnati Health Department · USNational University of Quilmes · AR

Funding

VIRAL GASTROENTERITIS PATHOGENSP01HD013021 · NICHD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MORROW, ARDYTHE L · 1985 to 2013
$15.0M
Characterization of Human CalicivirusesR01AI037093 · NIAID · EASTERN VIRGINIA MEDICAL SCHOOL · PI JIANG, XI · 1997 to 2010
$2.8M
Norwalk-like Viruses and Their ReceptorsR01AI055649 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI JIANG, XI · 2005 to 2009
$1.4M
Norovirus P Particle, A Multifunctional Platform For Vaccine DevelopmentR21AI092434 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI TAN, MING · 2011 to 2012
$421k
NIAID NIH HHS R01 AI037093NIAID NIH HHS R01 AI055649NIAID NIH HHS R01 AI37093NIAID NIH HHS R21 AI092434NIAID NIH HHS R21AI092434-01A1NICHD NIH HHS P01 HD013021NICHD NIH HHS P01 HD13021
6 · The paper itself

Abstract

The distal portion of rotavirus (RV) VP4 spike protein (VP8*) is implicated in binding to cellular receptors, thereby facilitating viral attachment and entry. While VP8* of some animal RVs engage sialic acid, human RVs often attach to and enter cells in a sialic acid-independent manner. A recent study demonstrated that the major human RVs (P[4], P[6], and P[8]) recognize human histo-blood group antigens (HBGAs). In this study, we performed a phylogenetic analysis of RVs and showed further variations of RV interaction with HBGAs. On the basis of the VP8* sequences, RVs are grouped into five P genogroups (P[I] to P[V]), of which P[I], P[IV], and P[V] mainly infect animals, P[II] infects humans, and P[III] infects both animals and humans. The sialic acid-dependent RVs (P[1], P[2], P[3], and P[7]) form a subcluster within P[I], while all three major P genotypes of human RVs (P[4], P[6], and P[8]) are clustered in P[II]. We then characterized three human RVs (P[9], P[14], and P[25]) in P[III] and observed a new pattern of binding to the type A antigen which is distinct from that of the P[II] RVs. The binding was demonstrated by hemagglutination and saliva binding assay using recombinant VP8* and native RVs. Homology modeling and mutagenesis study showed that the locations of the carbohydrate binding interfaces are shared with the sialic acid-dependent RVs, although different amino acids are involved. The P[III] VP8* proteins also bind the A antigens of the porcine and bovine mucins, suggesting the A antigen as a possible factor for cross-species transmission of RVs. Our study suggests that HBGAs play an important role in RV infection and evolution.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsBinding SitesBlood Group AntigensCapsid ProteinsCattleHost SpecificityHumansModels, MolecularMolecular Sequence DataMucinsMutagenesis, Site-DirectedPhylogenyProtein Interaction Domains and MotifsRecombinant ProteinsBlood Group AntigensCapsid ProteinsMucinsNS35 protein, rotavirusRecombinant ProteinsRNA-Binding ProteinsSialic AcidsViral Nonstructural ProteinsVP4 protein, Rotavirus

Identifiers

PMID22761376
PMCPMC3446626
OpenAlexW1985955773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.