Evidence map›Paper›PMID 22760232›Full record

ArticleHeredity2012

Genetic variation in the Yolk protein expression network of Drosophila melanogaster: sex-biased negative correlations with longevity.

A M Tarone, L M McIntyre, L G Harshman, S V Nuzhdin

Open access · bronzeAbstract read
In one paragraph

Article in Heredity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

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  5. Expression and Role ofInsects · 2022
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  15. Article
  16. Article
  17. Review
  18. Article
  19. Genotype-phenotype mapping in a post-GWAS world.Trends in genetics : TIG · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

A M TaroneDepartment of Molecular and Computation Biology, University of Southern California, Los Angeles, CA, USA. amtarone@ag.tamu.edu
L M McIntyre
L G Harshman
S V Nuzhdin
University of Southern California · USUniversity of Florida · USUniversity of Nebraska–Lincoln · US

Funding

UF Clinical and Translational Science AwardUL1TR000064 · NCATS · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2012 to 2014
$12.2M
Genetic variation of allele-specific transcriptome in DrosophilaR01GM077618 · NIGMS · UNIVERSITY OF FLORIDA · PI MCINTYRE, LAUREN M. · 2007 to 2010
$1.5M
Quantitative Comparisons between genotypes and model speciesR01GM102227 · NIGMS · UNIVERSITY OF FLORIDA · PI MCINTYRE, LAUREN M. · 2012 to 2015
$1.2M
NCATS NIH HHS UL1 TR000064NIGMS NIH HHS R01 GM077618NIGMS NIH HHS R01GM077618NIGMS NIH HHS R01 GM102227NIGMS NIH HHS S1R01GM077618-S1
6 · The paper itself

Abstract

One of the persistent problems in biology is understanding how genetic variation contributes to phenotypic variation. Associations at many levels have been reported, and yet causal inference has remained elusive. We propose to rely on the knowledge of causal relationships established by molecular biology approaches. The existing molecular knowledge forms a firm backbone upon which hypotheses connecting genetic variation, transcriptional variation and phenotypic variation can be built. The sex determination pathway is a well-established molecular network, with the Yolk protein 1-3 (Yp) genes as the most downstream target. Our analyses reveal that genetic variation in expression for genes known to be upstream in the pathway explains variation in downstream targets. Relationships differ between the two sexes, and each Yp has a distinct transcriptional pattern. Yp expression is significantly negatively correlated with longevity, an important life history trait, for both males and females.

Indexed as

Genetic VariationModels, MolecularSystems BiologyAnimalsCluster AnalysisDosage Compensation, GeneticDrosophila melanogasterDrosophila ProteinsEgg ProteinsFemaleGene Regulatory NetworksLongevityMaleSex Determination ProcessesTranscriptomeVitellogeninsDrosophila ProteinsEgg ProteinsVitellogeninsyolk protein 2, DrosophilaYP1 protein, DrosophilaYP3 protein, Drosophila

Identifiers

PMID22760232
PMCPMC3464022
OpenAlexW2091505632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.