Evidence map›Paper›PMID 22759751›Full record

ArticleCarcinogenesis2012

TP53 R249S mutation, genetic variations in HBX and risk of hepatocellular carcinoma in The Gambia.

Doriane A Gouas, Stphanie Villar, Sandra Ortiz-Cuaran, Pénélope Legros, Gilles Ferro, Gregory D Kirk, Olufunmilayo A Lesi, Maimuna Mendy, Ebrima Bah, Marlin D Friesen and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Carcinogenesis, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Analysis ofHealth science reports · 2020
    Article
  13. Article
  14. Article
  15. It takes a team: a gain-of-function story of p53-R249S.Journal of molecular cell biology · 2019
    Review
  16. Article
  17. Prevalence of Aflatoxin-AssociatedCancer prevention research (Philadelphia, Pa.) · 2018
    Article
  18. Article
  19. Genetic alterations in hepatocellular carcinoma: An update.World journal of gastroenterology · 2016
    Review
  20. Somatic TP53 Mutations in the Era of Genome Sequencing.Cold Spring Harbor perspectives in medicine · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Doriane A GouasInternational Agency for Research on Cancer, Molecular Carcinogenesis Group, Lyon, France.
Stphanie Villar
Sandra Ortiz-Cuaran
Pénélope Legros
Gilles Ferro
Gregory D Kirk
Olufunmilayo A Lesi
Maimuna Mendy
Ebrima Bah
Marlin D Friesen
John Groopman
Isabelle Chemin
Pierre Hainaut
Centre international de recherche sur le cancer · FR

Funding

Validation and Application of Risk, Biomarkers in Human StudiesP01ES006052 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI GROOPMAN, JOHN D · 1993 to 2012
$22.6M
Medical Research Council MC_U190081996NIEHS NIH HHS P01 ES006052
6 · The paper itself

Abstract

In regions with high prevalence of chronic hepatitis B virus (HBV) infection and dietary aflatoxin B(1) (AFB(1)) exposure, hepatocellular carcinomas (HCCs) often contain TP53 mutation at codon 249 (R249S). Furthermore, a C-terminal truncated HBx protein expressed from hepatocyte integrated HBV is associated with HCC development. This study evaluates the association between R249S and HBX status in relation to HCC in West African population. HBX (complete or 3'-truncated) and HBS genes were assessed by PCR in cell-free DNA (CFDNA) from plasma of subjects recruited in a hospital-based case-control study (325 controls, 78 cirrhotic patients and 198 HCC cases) conducted in The Gambia. These samples had been previously analyzed for R249S and HBV serological status. Complete HBX sequence was frequently detected in CFDNA of HCC-R249S positive (77%, 43/56) compared with HCC-R249S-negative cases (44%, 22/50). Conversely, the proportion of 3'-truncated HBX gene was significantly higher in HCC-R249S negative than positive cases (34%, 17/50, compared with 12%, 7/56) (χ(2) = 12.12; P = 0.002; distribution of R249S negative and positive according to HBX status). Occult HBV infection (detected by PCR) was present in 24% of HCC previously considered as negative by HBV serology. Moreover, HBV mutation analysis revealed that double mutation at nucleotides 1762(T)/1764(A) was associated with diagnosis of cirrhosis or HCC {cirrhosis: odds ratio (OR): 9.50 [95% confidence interval (CI) 1.50-60.11]; HCC: OR: 11.29 [95% CI 2.07-61.47]}. These findings suggest that in HCC from The Gambia, complete HBX sequences are often associated with the presence of TP53 R249S mutation.

Indexed as

AdultAflatoxin B1Carcinoma, HepatocellularCase-Control StudiesFemaleGambiaGenes, p53Genetic VariationHepatitis B, ChronicHepatitis B Surface AntigensHepatitis B virusHumansLiver CirrhosisLiver NeoplasmsMaleMiddle AgedAflatoxin B1Hepatitis B Surface Antigenshepatitis B virus X proteinTP53 protein, humanTrans-ActivatorsTumor Suppressor Protein p53Viral Regulatory and Accessory Proteins

Identifiers

PMID22759751
PMCPMC3388490
OpenAlexW2140536216

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.